Gm11956 Pseudogene Detail

Summary

• Symbol
  Gm11956
• Name
  predicted gene 11956

• Feature Type
  pseudogene
• IDs
  MGI:3649806
  NCBI Gene: 625760
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:4180754-4181265 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 2.94 cM

Strain
Comparison

• SNPs within 2kb
  103 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649806	pseudogene	Chr11:4180715-4181265 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010564	pseudogene	Chr11:1163084-1163595 (-)
A/J	MGP_AJ_G0010557	pseudogene	Chr11:1174840-1175348 (-)
AKR/J	MGP_AKRJ_G0010517	pseudogene	Chr11:1228925-1229436 (-)
BALB/cJ	MGP_BALBcJ_G0010531	pseudogene	Chr11:1144726-1145237 (-)
C3H/HeJ	MGP_C3HHeJ_G0010454	pseudogene	Chr11:1126684-1127195 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010801	pseudogene	Chr11:1245922-1246433 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009473	pseudogene	Chr11:1054888-1055384 (-)
CAST/EiJ	MGP_CASTEiJ_G0010279	pseudogene	Chr11:1090185-1090696 (-)
CBA/J	MGP_CBAJ_G0010426	pseudogene	Chr11:1491888-1492399 (-)
DBA/2J	MGP_DBA2J_G0010456	pseudogene	Chr11:1079032-1079543 (-)
FVB/NJ	MGP_FVBNJ_G0010474	pseudogene	Chr11:1112017-1112528 (-)
LP/J	MGP_LPJ_G0010546	pseudogene	Chr11:1270460-1270971 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010450	pseudogene	Chr11:1157340-1157848 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010779	pseudogene	Chr11:1237306-1237814 (-)
PWK/PhJ	MGP_PWKPhJ_G0010179	pseudogene	Chr11:1081580-1082091 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009994	pseudogene	Chr11:1200084-1200594 (-)
WSB/EiJ	MGP_WSBEiJ_G0010340	pseudogene	Chr11:1101452-1101960 (-)

Homology

• Gene Tree
  Gm11956
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000084012 (Evidence)
• NCBI Gene
  625760

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084012	Ensembl Gene Model | MGI Sequence Detail	512	C57BL/6J
transcript	ENSMUST00000119525	Ensembl | MGI Sequence Detail	512	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11956:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106545	Chr11:4182621-4182637 (-)	-1,364 bp
Tssr106544	Chr11:4181655-4181658 (-)	-392 bp