Gm11388 Pseudogene Detail

Summary

• Symbol
  Gm11388
• Name
  predicted gene 11388

• Feature Type
  pseudogene
• IDs
  MGI:3649831
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:33825608-33825766 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 13.93 cM

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649831	pseudogene	Chr13:33825608-33825766 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040057	pseudogene	Chr13:31769249-31769407 (+)
A/J	MGP_AJ_G0040062	pseudogene	Chr13:30844601-30844759 (+)
AKR/J	MGP_AKRJ_G0039980	pseudogene	Chr13:31528256-31528414 (+)
BALB/cJ	MGP_BALBcJ_G0040039	pseudogene	Chr13:30900559-30900717 (+)
C3H/HeJ	MGP_C3HHeJ_G0039687	pseudogene	Chr13:31470075-31470233 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040620	pseudogene	Chr13:32798677-32798835 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038788	pseudogene	Chr13:31183841-31183999 (+)
CBA/J	MGP_CBAJ_G0039652	pseudogene	Chr13:34227246-34227404 (+)
DBA/2J	MGP_DBA2J_G0039846	pseudogene	Chr13:30325586-30325744 (+)
FVB/NJ	MGP_FVBNJ_G0039819	pseudogene	Chr13:29924605-29924763 (+)
LP/J	MGP_LPJ_G0039894	pseudogene	Chr13:31981495-31981653 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039806	pseudogene	Chr13:34434613-34434771 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040716	pseudogene	Chr13:31207655-31207813 (+)
PWK/PhJ	MGP_PWKPhJ_G0038475	pseudogene	Chr13:30461521-30461679 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038191	pseudogene	Chr13:29940768-29940926 (+)
WSB/EiJ	MGP_WSBEiJ_G0039016	pseudogene	Chr13:31557180-31557338 (+)

Homology

• Gene Tree
  Gm11388
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm11388
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000083042 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083042	Ensembl Gene Model | MGI Sequence Detail	159	C57BL/6J
transcript	ENSMUST00000120908	Ensembl | MGI Sequence Detail	159	Not Applicable

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69