Gm13954 Gene Detail

Summary

• Symbol
  Gm13954
• Name
  predicted gene 13954

• Feature Type
  lncRNA gene
• IDs
  MGI:3649858
  NCBI Gene: 100043394
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:105539344-105540443 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 55.33 cM

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649858	lncRNA gene	Chr2:105539344-105540443 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003611	antisense lncRNA gene	Chr2:107884896-107885995 (+)
A/J	MGP_AJ_G0003593	antisense lncRNA gene	Chr2:103389100-103390199 (+)
AKR/J	MGP_AKRJ_G0003571	antisense lncRNA gene	Chr2:106208954-106210053 (+)
BALB/cJ	MGP_BALBcJ_G0003582	antisense lncRNA gene	Chr2:103664856-103665955 (+)
C3H/HeJ	MGP_C3HHeJ_G0003529	antisense lncRNA gene	Chr2:106509219-106510318 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003720	antisense lncRNA gene	Chr2:111418789-111419888 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003229	antisense lncRNA gene	Chr2:99176750-99177716 (+)
CAST/EiJ	MGP_CASTEiJ_G0003492	antisense lncRNA gene	Chr2:107038885-107039984 (+)
CBA/J	MGP_CBAJ_G0003526	antisense lncRNA gene	Chr2:115268642-115269741 (+)
DBA/2J	MGP_DBA2J_G0003534	antisense lncRNA gene	Chr2:102922480-102923579 (+)
FVB/NJ	MGP_FVBNJ_G0003554	antisense lncRNA gene	Chr2:101902287-101903386 (+)
LP/J	MGP_LPJ_G0003611	antisense lncRNA gene	Chr2:108017084-108018183 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003542	antisense lncRNA gene	Chr2:119087166-119088265 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003722	antisense lncRNA gene	Chr2:106396392-106397491 (+)
PWK/PhJ	MGP_PWKPhJ_G0003447	antisense lncRNA gene	Chr2:102466887-102467986 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003391	antisense lncRNA gene	Chr2:105619346-105620443 (+)
WSB/EiJ	MGP_WSBEiJ_G0003526	antisense lncRNA gene	Chr2:107142678-107143777 (+)

Homology

• Gene Tree
  Gm13954
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  2
• Genomic Mutations
  4 involving Gm13954
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000084870 (Evidence)
• NCBI Gene
  100043394

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084870	Ensembl Gene Model | MGI Sequence Detail	1100	C57BL/6J
transcript	ENSMUST00000123441	Ensembl | MGI Sequence Detail	543	Not Applicable

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:151902 Favor J, et al., Analysis of Pax6 Contiguous Gene Deletions in the Mouse, Mus musculus, Identifies Regions Distinct from Pax6 Responsible for Extreme Small-Eye and Belly-Spotting Phenotypes. Genetics. 2009 Aug;182(4):1077-88