Csnk2a1-ps4 Pseudogene Detail

Summary

• Symbol
  Csnk2a1-ps4
• Name
  casein kinase 2, alpha 1 polypeptide, pseudogene 4
• Synonyms
  Gm11255

• Feature Type
  pseudogene
• IDs
  MGI:3649873
  NCBI Gene: 623529
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:75242738-75243917 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 36.66 cM

Strain
Comparison

• SNPs within 2kb
  161 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649873	pseudogene	Chr4:75242538-75244063 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012716	pseudogene	Chr4:74596921-74598100 (+)
A/J	MGP_AJ_G0012702	pseudogene	Chr4:72087847-72089026 (+)
AKR/J	MGP_AKRJ_G0012674	pseudogene	Chr4:73876962-73878141 (+)
BALB/cJ	MGP_BALBcJ_G0012685	pseudogene	Chr4:72228444-72229623 (+)
C3H/HeJ	MGP_C3HHeJ_G0012544	pseudogene	Chr4:74464733-74465912 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013014	pseudogene	Chr4:77545662-77546841 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012541	pseudogene	ChrX:10113652-10114824 (+)
CAST/EiJ	MGP_CASTEiJ_G0012299	pseudogene	Chr4:72394543-72395722 (+)
CBA/J	MGP_CBAJ_G0012521	pseudogene	Chr4:79869380-79870559 (+)
DBA/2J	MGP_DBA2J_G0012581	pseudogene	Chr4:71843130-71844309 (+)
FVB/NJ	MGP_FVBNJ_G0012584	pseudogene	Chr4:70904329-70905508 (+)
LP/J	MGP_LPJ_G0012654	pseudogene	Chr4:75010352-75011531 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012593	pseudogene	Chr4:84032787-84033966 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013019	pseudogene	Chr4:73984891-73986070 (+)
PWK/PhJ	MGP_PWKPhJ_G0012124	pseudogene	Chr4:70263689-70264868 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011938	pseudogene	Chr4:71379382-71380559 (+)
WSB/EiJ	MGP_WSBEiJ_G0012323	pseudogene	Chr4:74092157-74093336 (+)

Homology

• Gene Tree
  Csnk2a1-ps4
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Csnk2a1-ps4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000083224 (Evidence)
• NCBI Gene
  623529

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083224	Ensembl Gene Model | MGI Sequence Detail	1180	C57BL/6J
transcript	ENSMUST00000120448	Ensembl | MGI Sequence Detail	1180	Not Applicable

Other
Accession IDs

MGI:6456208

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;