Gm12780 Pseudogene Detail

Summary

• Symbol
  Gm12780
• Name
  predicted gene 12780

• Feature Type
  pseudogene
• IDs
  MGI:3649896
  NCBI Gene: 668460
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:34194846-34195490 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 19.92 cM

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649896	pseudogene	Chr7:34194846-34195490 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0013868	pseudogene	Chr7:33781501-33782145 (-)
A/J	MGP_AJ_G0013883	pseudogene	Chr7:32937337-32937981 (-)
AKR/J	MGP_AKRJ_G0013823	pseudogene	Chr7:33724518-33725162 (-)
BALB/cJ	MGP_BALBcJ_G0013851	pseudogene	Chr7:33229471-33230115 (-)
C3H/HeJ	MGP_C3HHeJ_G0013680	pseudogene	Chr7:34611338-34611982 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014268	pseudogene	Chr7:35495927-35496571 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012143	pseudogene	Chr7:33668238-33668882 (-)
CAST/EiJ	MGP_CASTEiJ_G0013347	pseudogene	Chr7:25727025-25727671 (-)
CBA/J	MGP_CBAJ_G0013655	pseudogene	Chr7:36594894-36595538 (-)
DBA/2J	MGP_DBA2J_G0013739	pseudogene	Chr7:32786012-32786656 (-)
FVB/NJ	MGP_FVBNJ_G0013734	pseudogene	Chr7:32700736-32701380 (-)
LP/J	MGP_LPJ_G0013811	pseudogene	Chr7:34142385-34143029 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013759	pseudogene	Chr7:35662207-35662851 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014234	pseudogene	Chr7:33253090-33253734 (-)
PWK/PhJ	MGP_PWKPhJ_G0013160	pseudogene	Chr7:26106917-26107561 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012928	pseudogene	Chr7:22821635-22822278 (-)
WSB/EiJ	MGP_WSBEiJ_G0013403	pseudogene	Chr7:33791323-33791967 (-)

Homology

• Gene Tree
  Gm12780
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000081863 (Evidence)
• NCBI Gene
  668460

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081863	Ensembl Gene Model | MGI Sequence Detail	645	C57BL/6J
transcript	ENSMUST00000122458	Ensembl | MGI Sequence Detail	645	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;