Gm13392 Pseudogene Detail

Summary

• Symbol
  Gm13392
• Name
  predicted gene 13392

• Feature Type
  pseudogene
• IDs
  MGI:3649898
  NCBI Gene: 100504187
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:23798453-23798602 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 15.94 cM

Strain
Comparison

• SNPs within 2kb
  101 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649898	pseudogene	Chr2:23798453-23798602 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013307	pseudogene	Chr5:149596520-149596657 (+)
A/J	MGP_AJ_G0013287	pseudogene	Chr5:143174929-143175066 (+)
AKR/J	MGP_AKRJ_G0013251	pseudogene	Chr5:147636115-147636252 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0013634	pseudogene	Chr5:155069103-155069240 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011778	pseudogene	Chr5:136960482-136960620 (+)
CAST/EiJ	MGP_CASTEiJ_G0012835	pseudogene	Chr5:148007995-148008132 (+)
CBA/J	MGP_CBAJ_G0013082	pseudogene	Chr5:161436001-161436138 (+)
DBA/2J	MGP_DBA2J_G0013166	pseudogene	Chr5:142923530-142923667 (+)
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0013183	pseudogene	Chr5:163799877-163800014 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013637	pseudogene	Chr5:147534066-147534203 (+)
PWK/PhJ	MGP_PWKPhJ_G0012650	pseudogene	Chr5:142038509-142038647 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012438	pseudogene	Chr5:145271073-145271211 (+)
WSB/EiJ	MGP_WSBEiJ_G0012875	pseudogene	Chr5:148329223-148329360 (+)

Homology

• Gene Tree
  Gm13392
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16

• Ensembl
  ENSMUSG00000083373 (Evidence)
• NCBI Gene
  100504187

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083373	Ensembl Gene Model | MGI Sequence Detail	150	C57BL/6J
transcript	ENSMUST00000117708	Ensembl | MGI Sequence Detail	150	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;