Gm12778 Pseudogene Detail

Summary

• Symbol
  Gm12778
• Name
  predicted gene 12778

• Feature Type
  pseudogene
• IDs
  MGI:3649899
  NCBI Gene: 108167496
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:33875137-33875469 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 19.44 cM

Strain
Comparison

• SNPs within 2kb
  153 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649899	pseudogene	Chr7:33875137-33875503 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013866	pseudogene	Chr7:33433229-33433561 (+)
A/J	MGP_AJ_G0013881	pseudogene	Chr7:32598490-32598822 (+)
AKR/J	MGP_AKRJ_G0013821	pseudogene	Chr7:33382127-33382459 (+)
BALB/cJ	MGP_BALBcJ_G0013849	pseudogene	Chr7:32889158-32889490 (+)
C3H/HeJ	MGP_C3HHeJ_G0013678	pseudogene	Chr7:34270481-34270813 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014266	pseudogene	Chr7:35146907-35147239 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0013653	pseudogene	Chr7:36234391-36234723 (+)
DBA/2J	MGP_DBA2J_G0013737	pseudogene	Chr7:32465387-32465668 (+)
FVB/NJ	MGP_FVBNJ_G0013732	pseudogene	Chr7:32374971-32375303 (+)
LP/J	MGP_LPJ_G0013809	pseudogene	Chr7:33802518-33802850 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013757	pseudogene	Chr7:35272948-35288936 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0013401	pseudogene	Chr7:33455022-33455354 (+)

Homology

• Gene Tree
  Gm12778
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16

• Ensembl
  ENSMUSG00000081491 (Evidence)
• NCBI Gene
  108167496

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081491	Ensembl Gene Model | MGI Sequence Detail	333	C57BL/6J
transcript	ENSMUST00000122341	Ensembl | MGI Sequence Detail	333	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;