Scgb2b25-ps Pseudogene Detail

Summary

• Symbol
  Scgb2b25-ps
• Name
  secretoglobin, family 2B, member 25, pseudogene
• Synonyms
  Abpbg25-ps

• Feature Type
  pseudogene
• IDs
  MGI:3649900
  NCBI Gene: 627079
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:33552481-33554243 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 19.37 cM

Strain
Comparison

• SNPs within 2kb
  205 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649900	pseudogene	Chr7:33552481-33554243 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0040559	pseudogene	Chr7:33058622-33060384 (-)
A/J	MGP_AJ_G0040549	pseudogene	Chr7:32275698-32277460 (-)
AKR/J	MGP_AKRJ_G0040474	pseudogene	Chr7:32990683-32992445 (-)
BALB/cJ	MGP_BALBcJ_G0040545	pseudogene	Chr7:32461597-32463359 (-)
C3H/HeJ	MGP_C3HHeJ_G0040179	pseudogene	Chr7:33876083-33877845 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0041207	pseudogene	Chr7:34779760-34781522 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0039229	pseudogene	Chr7:24976198-24977962 (-)
CBA/J	MGP_CBAJ_G0040144	pseudogene	Chr7:35793930-35795692 (-)
DBA/2J	MGP_DBA2J_G0040350	pseudogene	Chr7:32032231-32033994 (-)
FVB/NJ	MGP_FVBNJ_G0040292	pseudogene	Chr7:32031268-32033030 (-)
LP/J	MGP_LPJ_G0040387	pseudogene	Chr7:33342011-33343773 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0040284	pseudogene	Chr7:34808362-34810124 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041260	pseudogene	Chr7:32499503-32501267 (-)
PWK/PhJ	MGP_PWKPhJ_G0038904	pseudogene	Chr7:25414609-25416373 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0038605	pseudogene	Chr7:22128448-22130247 (-)
WSB/EiJ	MGP_WSBEiJ_G0039479	pseudogene	Chr7:33076591-33078353 (-)

Homology

• Gene Tree
  Scgb2b25-ps
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000084296 (Evidence)
• NCBI Gene
  627079

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084296	Ensembl Gene Model | MGI Sequence Detail	1763	C57BL/6J
transcript	ENSMUST00000121936	Ensembl | MGI Sequence Detail	307	Not Applicable

References

• Summaries
  All 6
• Earliest
  J:174351 Laukaitis CM, et al., Rapid bursts of androgen-binding protein (Abp) gene duplication occurred independently in diverse mammals. BMC Evol Biol. 2008;8:46
• Latest
  J:185789 Jackson BC, et al., Update of the human secretoglobin (SCGB) gene superfamily and an example of 'evolutionary bloom' of androgen-binding protein genes within the mouse Scgb gene superfamily. Hum Genomics. 2011 Oct;5(6):691-702

TSS for Scgb2b25-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr71962	Chr7:33554260-33554264 (-)	-19 bp