Gm12412 Pseudogene Detail

Summary

• Symbol
  Gm12412
• Name
  predicted gene 12412

• Feature Type
  pseudogene
• IDs
  MGI:3649919
  NCBI Gene: 100040580
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:45776882-45777209 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 24.33 cM

Strain
Comparison

• SNPs within 2kb
  176 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649919	pseudogene	Chr4:45776882-45777209 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012632	pseudogene	Chr4:44030531-44030858 (-)
A/J	MGP_AJ_G0012623	pseudogene	Chr4:42452378-42452705 (-)
AKR/J	MGP_AKRJ_G0012591	pseudogene	Chr4:43463857-43464184 (-)
BALB/cJ	MGP_BALBcJ_G0012607	pseudogene	Chr4:42538808-42539135 (-)
C3H/HeJ	MGP_C3HHeJ_G0012469	pseudogene	Chr4:44075736-44076063 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012926	pseudogene	Chr4:45676616-45676943 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011245	pseudogene	Chr4:39843114-39843444 (-)
CAST/EiJ	MGP_CASTEiJ_G0012224	pseudogene	Chr4:43634522-43634852 (-)
CBA/J	MGP_CBAJ_G0012448	pseudogene	Chr4:47102649-47102976 (-)
DBA/2J	MGP_DBA2J_G0012505	pseudogene	Chr4:42341903-42342230 (-)
FVB/NJ	MGP_FVBNJ_G0012506	pseudogene	Chr4:41581916-41582243 (-)
LP/J	MGP_LPJ_G0012574	pseudogene	Chr4:44088505-44088832 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012511	pseudogene	Chr4:50235508-50235835 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012927	pseudogene	Chr4:43686503-43686830 (-)
PWK/PhJ	MGP_PWKPhJ_G0012054	pseudogene	Chr4:42426981-42427308 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011869	pseudogene	Chr4:43188471-43188801 (-)
WSB/EiJ	MGP_WSBEiJ_G0012247	pseudogene	Chr4:43587771-43588098 (-)

Homology

• Gene Tree
  Gm12412
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000083685 (Evidence)
• NCBI Gene
  100040580

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083685	Ensembl Gene Model | MGI Sequence Detail	328	C57BL/6J
transcript	ENSMUST00000121867	Ensembl | MGI Sequence Detail	328	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;