Gm13087 Pseudogene Detail

Summary

• Symbol
  Gm13087
• Name
  predicted gene 13087

• Feature Type
  pseudogene
• IDs
  MGI:3649970
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:143461868-143462123 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 77.91 cM

Strain
Comparison

• SNPs within 2kb
  61 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649970	pseudogene	Chr4:143461868-143462123 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0012913	pseudogene	Chr4:140618897-140619152 (-)
AKR/J	MGP_AKRJ_G0012882	pseudogene	Chr4:144629777-144630032 (-)
BALB/cJ	MGP_BALBcJ_G0012888	pseudogene	Chr4:141267682-141267937 (-)
C3H/HeJ	MGP_C3HHeJ_G0012747	pseudogene	Chr4:145020341-145020596 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013228	pseudogene	Chr4:151999596-151999851 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0012717	pseudogene	Chr4:156580681-156580936 (-)
DBA/2J	MGP_DBA2J_G0012783	pseudogene	Chr4:140946447-140946702 (-)
FVB/NJ	MGP_FVBNJ_G0012792	pseudogene	Chr4:140080228-140080456 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0012803	pseudogene	Chr4:160258401-160258629 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013246	pseudogene	Chr4:145174797-145175052 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012518	pseudogene	Chr4:145464821-145465075 (-)

Homology

• Gene Tree
  Gm13087
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13087
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14

• Ensembl
  ENSMUSG00000082717 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082717	Ensembl Gene Model | MGI Sequence Detail	256	C57BL/6J
transcript	ENSMUST00000118298	Ensembl | MGI Sequence Detail	256	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;