Gm12313 Pseudogene Detail

Summary

• Symbol
  Gm12313
• Name
  predicted gene 12313

• Feature Type
  pseudogene
• IDs
  MGI:3649993
  NCBI Gene: 115487759
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:70317379-70317799 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 42.99 cM

Strain
Comparison

• SNPs within 2kb
  27 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649993	pseudogene	Chr11:70317311-70317804 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010761	pseudogene	Chr11:70959839-71323120 (+)
A/J	MGP_AJ_G0010759	pseudogene	Chr11:68617467-68617887 (+)
AKR/J	MGP_AKRJ_G0010716	pseudogene	Chr11:70678891-70679311 (+)
BALB/cJ	MGP_BALBcJ_G0010732	pseudogene	Chr11:68924876-68925296 (+)
C3H/HeJ	MGP_C3HHeJ_G0010642	pseudogene	Chr11:70701510-70701930 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011006	pseudogene	Chr11:73099982-73480979 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009633	pseudogene	Chr11:65192950-65193363 (+)
CAST/EiJ	MGP_CASTEiJ_G0010463	pseudogene	Chr11:70593165-70593585 (+)
CBA/J	MGP_CBAJ_G0010616	pseudogene	Chr11:76787181-76787601 (+)
DBA/2J	MGP_DBA2J_G0010654	pseudogene	Chr11:67848568-67848988 (+)
FVB/NJ	MGP_FVBNJ_G0010668	pseudogene	Chr11:67492713-67493133 (+)
LP/J	MGP_LPJ_G0010744	pseudogene	Chr11:71895996-71896416 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010646	pseudogene	Chr11:77329642-77330062 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010982	pseudogene	Chr11:70935221-70935641 (+)
PWK/PhJ	MGP_PWKPhJ_G0010357	pseudogene	Chr11:68488804-68489224 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010167	pseudogene	Chr11:70385376-70385828 (+)
WSB/EiJ	MGP_WSBEiJ_G0010523	pseudogene	Chr11:70602502-70602922 (+)

Homology

• Gene Tree
  Gm12313
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  11
• Chemically induced (other)
  1
• Gene trapped
  10
• Genomic Mutations
  1 involving Gm12313
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000082370 (Evidence)
• NCBI Gene
  115487759

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082370	Ensembl Gene Model | MGI Sequence Detail	421	C57BL/6J
transcript	ENSMUST00000121347	Ensembl | MGI Sequence Detail	421	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14