Gm13039 Pseudogene Detail

Summary

• Symbol
  Gm13039
• Name
  predicted gene 13039

• Feature Type
  pseudogene
• IDs
  MGI:3649997
  NCBI Gene: 100384872
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:142893173-142893966 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 76.98 cM

Strain
Comparison

• SNPs within 2kb
  97 from dbSNP Build 142
• Strain Annotations
  5

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649997	pseudogene	Chr4:142893167-142894012 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012921	pseudogene	Chr4:146357732-146359957 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0012876	pseudogene	Chr4:144028144-144030659 (+)
BALB/cJ	MGP_BALBcJ_G0012882	pseudogene	Chr4:140659723-140661265 (+)
C3H/HeJ	MGP_C3HHeJ_G0012741	pseudogene	Chr4:144406694-144408222 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm13039
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm13039
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  9
• RefSeq
  1

• Ensembl
  ENSMUSG00000083826 (Evidence)
• NCBI Gene
  100384872

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083826	Ensembl Gene Model | MGI Sequence Detail	794	C57BL/6J
transcript	ENSMUST00000118638	Ensembl | MGI Sequence Detail	794	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;