Gm11621 Pseudogene Detail

Summary

• Symbol
  Gm11621
• Name
  predicted gene 11621

• Feature Type
  pseudogene
• IDs
  MGI:3650006
  NCBI Gene: 632784
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:104819042-104819630 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 68.33 cM

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650006	pseudogene	Chr11:104818970-104819825 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010855	pseudogene	Chr11:108127757-108128345 (+)
A/J	MGP_AJ_G0010852	pseudogene	Chr11:103503674-103504262 (+)
AKR/J	MGP_AKRJ_G0010812	pseudogene	Chr11:106659528-106660116 (+)
BALB/cJ	MGP_BALBcJ_G0010830	pseudogene	Chr11:103942544-103943132 (+)
C3H/HeJ	MGP_C3HHeJ_G0010731	pseudogene	Chr11:106920376-106920964 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011101	pseudogene	Chr11:111465142-111465730 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009711	pseudogene	Chr11:100868614-100869198 (+)
CAST/EiJ	MGP_CASTEiJ_G0010556	pseudogene	Chr11:107965730-107966319 (+)
CBA/J	MGP_CBAJ_G0010702	pseudogene	Chr11:116094237-116094825 (+)
DBA/2J	MGP_DBA2J_G0010749	pseudogene	Chr11:103011814-103012402 (+)
FVB/NJ	MGP_FVBNJ_G0010767	pseudogene	Chr11:102532069-102532657 (+)
LP/J	MGP_LPJ_G0010837	pseudogene	Chr11:108586961-108587549 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010743	pseudogene	Chr11:115392153-115392741 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011080	pseudogene	Chr11:107102851-107103439 (+)
PWK/PhJ	MGP_PWKPhJ_G0010446	pseudogene	Chr11:104098387-104098977 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010262	pseudogene	Chr11:106872095-106872684 (+)
WSB/EiJ	MGP_WSBEiJ_G0010608	pseudogene	Chr11:107084868-107085456 (+)

Homology

• Gene Tree
  Gm11621
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000080694 (Evidence)
• NCBI Gene
  632784

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000080694	Ensembl Gene Model | MGI Sequence Detail	589	C57BL/6J
transcript	ENSMUST00000118253	Ensembl | MGI Sequence Detail	589	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;