Gm13735 Pseudogene Detail

Summary

• Symbol
  Gm13735
• Name
  predicted gene 13735

• Feature Type
  pseudogene
• IDs
  MGI:3650011
  NCBI Gene: 546767
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:87066916-87067585 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 49.86 cM

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650011	pseudogene	Chr2:87066848-87067788 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011744	pseudogene	Chr2:88248430-88249099 (+)
A/J	MGP_AJ_G0011738	pseudogene	Chr2:84698615-84699284 (+)
AKR/J	MGP_AKRJ_G0011705	pseudogene	Chr2:87029329-87045729 (+)
BALB/cJ	MGP_BALBcJ_G0011717	pseudogene	Chr2:84906364-84922761 (+)
C3H/HeJ	MGP_C3HHeJ_G0011604	pseudogene	Chr2:87281972-87282641 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012014	pseudogene	Chr2:91178521-91179190 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010305	pseudogene	Chr19:49829336-49869810 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0011579	pseudogene	Chr2:94196948-94213444 (+)
DBA/2J	MGP_DBA2J_G0011629	pseudogene	Chr2:84304843-84321336 (+)
FVB/NJ	MGP_FVBNJ_G0011635	pseudogene	Chr2:83399245-83399914 (+)
LP/J	MGP_LPJ_G0011700	pseudogene	Chr2:88255313-88255982 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011636	pseudogene	Chr2:96927467-96943801 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012010	pseudogene	Chr2:87172018-87172687 (+)
PWK/PhJ	MGP_PWKPhJ_G0011015	pseudogene	Chr19:50550550-50591695 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010844	pseudogene	Chr19:51303638-51348944 (+)
WSB/EiJ	MGP_WSBEiJ_G0011420	pseudogene	Chr2:87882880-87883549 (+)

Homology

• Gene Tree
  Gm13735
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm13735
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000081853 (Evidence)
• NCBI Gene
  546767

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081853	Ensembl Gene Model | MGI Sequence Detail	670	C57BL/6J
transcript	ENSMUST00000120217	Ensembl | MGI Sequence Detail	670	Not Applicable

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087