Gm12971 Gene Detail

Summary

• Symbol
  Gm12971
• Name
  predicted gene 12971

• Feature Type
  lncRNA gene
• IDs
  MGI:3650041
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:130485874-130489690 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 63.53 cM

Strain
Comparison

• SNPs within 2kb
  31 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650041	lncRNA gene	Chr4:130485874-130489690 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037015	sense intronic lncRNA gene	Chr4:132793204-132796937 (+)
A/J	MGP_AJ_G0037003	sense intronic lncRNA gene	Chr4:127293358-127297285 (+)
AKR/J	MGP_AKRJ_G0036951	sense intronic lncRNA gene	Chr4:130869527-130873315 (+)
BALB/cJ	MGP_BALBcJ_G0036994	sense intronic lncRNA gene	Chr4:127907481-127911315 (+)
C3H/HeJ	MGP_C3HHeJ_G0036681	sense intronic lncRNA gene	Chr4:131087839-131091630 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037507	sense intronic lncRNA gene	Chr4:137586060-137589876 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034558	sense intronic lncRNA gene	Chr4:120399833-120403562 (+)
CAST/EiJ	MGP_CASTEiJ_G0035869	sense intronic lncRNA gene	Chr4:129127033-129130618 (+)
CBA/J	MGP_CBAJ_G0036656	sense intronic lncRNA gene	Chr4:141084530-141088342 (+)
DBA/2J	MGP_DBA2J_G0036831	sense intronic lncRNA gene	Chr4:127723233-127727047 (+)
FVB/NJ	MGP_FVBNJ_G0036781	sense intronic lncRNA gene	Chr4:126537438-126541688 (+)
LP/J	MGP_LPJ_G0036878	sense intronic lncRNA gene	Chr4:132940664-132944503 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036789	sense intronic lncRNA gene	Chr4:145793591-145798385 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037624	sense intronic lncRNA gene	Chr4:131236743-131240595 (+)
PWK/PhJ	MGP_PWKPhJ_G0035561	sense intronic lncRNA gene	Chr4:124358656-124362774 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035370	sense intronic lncRNA gene	Chr4:127096943-127101068 (+)
WSB/EiJ	MGP_WSBEiJ_G0036069	sense intronic lncRNA gene	Chr4:131381694-131385515 (+)

Homology

• Gene Tree
  Gm12971
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12971
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000087449 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087449	Ensembl Gene Model | MGI Sequence Detail	3817	C57BL/6J
transcript	ENSMUST00000154720	Ensembl | MGI Sequence Detail	511	Not Applicable

References

• Summaries
  All 8

  Phenotypes 4
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8