Gm11970 Pseudogene Detail

Summary

• Symbol
  Gm11970
• Name
  predicted gene 11970

• Feature Type
  pseudogene
• IDs
  MGI:3650056
  NCBI Gene: 102640218
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:6396218-6396537 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 4.08 cM

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650056	pseudogene	Chr11:6395819-6396633 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010571	pseudogene	Chr11:3570449-3570768 (+)
A/J	MGP_AJ_G0010564	pseudogene	Chr11:3416131-3416450 (+)
AKR/J	MGP_AKRJ_G0010524	pseudogene	Chr11:3582209-3582528 (+)
BALB/cJ	MGP_BALBcJ_G0010539	pseudogene	Chr11:3422051-3422370 (+)
C3H/HeJ	MGP_C3HHeJ_G0010461	pseudogene	Chr11:3454586-3454905 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010808	pseudogene	Chr11:3667070-3667389 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0010286	pseudogene	Chr11:3447163-3447482 (+)
CBA/J	MGP_CBAJ_G0010433	pseudogene	Chr11:4080104-4081346 (+)
DBA/2J	MGP_DBA2J_G0010463	pseudogene	Chr11:3325883-3326202 (+)
FVB/NJ	MGP_FVBNJ_G0010481	pseudogene	Chr11:3349711-3350030 (+)
LP/J	MGP_LPJ_G0010553	pseudogene	Chr11:3636333-3636663 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010457	pseudogene	Chr11:3622416-3622735 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010786	pseudogene	Chr11:3606732-3607051 (+)
PWK/PhJ	MGP_PWKPhJ_G0010186	pseudogene	Chr11:3358700-3360473 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010001	pseudogene	Chr11:3550267-3550587 (+)
WSB/EiJ	MGP_WSBEiJ_G0010347	pseudogene	Chr11:3423527-3423846 (+)

Homology

• Gene Tree
  Gm11970
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000079988 (Evidence)
• NCBI Gene
  102640218

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000079988	Ensembl Gene Model | MGI Sequence Detail	320	C57BL/6J
transcript	ENSMUST00000116105	Ensembl | MGI Sequence Detail	320	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 6
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Gm11970:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100256	Chr11:6396174-6396195 (+)	-33 bp