Polr2k-ps Pseudogene Detail

Summary

• Symbol
  Polr2k-ps
• Name
  polymerase (RNA) II (DNA directed) polypeptide K, pseudogene
• Synonyms
  Gm11526

• Feature Type
  pseudogene
• IDs
  MGI:3650073
  NCBI Gene: 102238523
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:95652317-95652491 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 59.01 cM

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650073	pseudogene	Chr11:95652278-95652667 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010825	pseudogene	Chr11:97993435-97993609 (+)
A/J	MGP_AJ_G0010822	pseudogene	Chr11:94033267-94033441 (+)
AKR/J	MGP_AKRJ_G0010782	pseudogene	Chr11:96936567-96936741 (+)
BALB/cJ	MGP_BALBcJ_G0010798	pseudogene	Chr11:94510128-94510302 (+)
C3H/HeJ	MGP_C3HHeJ_G0010704	pseudogene	Chr11:97066801-97066975 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011071	pseudogene	Chr11:101063481-101063655 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009691	pseudogene	Chr11:91508284-91508464 (+)
CAST/EiJ	MGP_CASTEiJ_G0010529	pseudogene	Chr11:97878160-97878334 (+)
CBA/J	MGP_CBAJ_G0010676	pseudogene	Chr11:105198204-105198378 (+)
DBA/2J	MGP_DBA2J_G0010718	pseudogene	Chr11:93602234-93602408 (+)
FVB/NJ	MGP_FVBNJ_G0010736	pseudogene	Chr11:93077159-93077333 (+)
LP/J	MGP_LPJ_G0010808	pseudogene	Chr11:98559024-98559198 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010710	pseudogene	Chr11:105218006-105218180 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011049	pseudogene	Chr11:97214960-97215134 (+)
PWK/PhJ	MGP_PWKPhJ_G0010418	pseudogene	Chr11:94544486-94544660 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010236	pseudogene	Chr11:96916139-96916315 (+)
WSB/EiJ	MGP_WSBEiJ_G0010582	pseudogene	Chr11:97131532-97131706 (+)

Homology

• Gene Tree
  Polr2k-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Polr2k-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000082981 (Evidence)
• NCBI Gene
  102238523

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082981	Ensembl Gene Model | MGI Sequence Detail	175	C57BL/6J
transcript	ENSMUST00000120170	Ensembl | MGI Sequence Detail	175	Not Applicable

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:109163 Yu YE, et al., A deficiency in the region homologous to human 17q21.33-q23.2 causes heart defects in mice. Genetics. 2006 May;173(1):297-307