Gm12090 Pseudogene Detail

Summary

• Symbol
  Gm12090
• Name
  predicted gene 12090

• Feature Type
  pseudogene
• IDs
  MGI:3650090
  NCBI Gene: 102633366
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:29502082-29503010 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 16.79 cM

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650090	pseudogene	Chr11:29502019-29503491 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010647	pseudogene	Chr11:27569969-27570897 (-)
A/J	MGP_AJ_G0010641	pseudogene	Chr11:26545523-26546442 (-)
AKR/J	MGP_AKRJ_G0010602	pseudogene	Chr11:27410924-27411843 (-)
BALB/cJ	MGP_BALBcJ_G0010616	pseudogene	Chr11:26749058-26749977 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0010891	pseudogene	Chr11:28502928-28503817 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009538	pseudogene	Chr11:25184877-25185725 (-)
CAST/EiJ	MGP_CASTEiJ_G0010359	pseudogene	Chr11:27381104-27387664 (-)
CBA/J	MGP_CBAJ_G0010506	pseudogene	Chr11:29850923-29851884 (-)
DBA/2J	MGP_DBA2J_G0010541	pseudogene	Chr11:26405222-26406141 (-)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0010628	pseudogene	Chr11:27818097-27819343 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010530	pseudogene	Chr11:30938936-30939815 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010865	pseudogene	Chr11:27508969-27510500 (-)
PWK/PhJ	MGP_PWKPhJ_G0010254	pseudogene	Chr11:26493356-26494326 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010066	pseudogene	Chr11:27204386-27205260 (-)
WSB/EiJ	MGP_WSBEiJ_G0010415	pseudogene	Chr11:27215728-27216663 (-)

Homology

• Gene Tree
  Gm12090
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12090
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000081575 (Evidence)
• NCBI Gene
  102633366

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081575	Ensembl Gene Model | MGI Sequence Detail	929	C57BL/6J
transcript	ENSMUST00000118692	Ensembl | MGI Sequence Detail	758	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6