Gm13460 Pseudogene Detail

Summary

• Symbol
  Gm13460
• Name
  predicted gene 13460

• Feature Type
  pseudogene
• IDs
  MGI:3650104
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:40888869-40889221 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 24.65 cM

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650104	pseudogene	Chr2:40888869-40889221 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011613	pseudogene	Chr2:39857841-39858193 (+)
A/J	MGP_AJ_G0011611	pseudogene	Chr2:38251720-38252072 (+)
AKR/J	MGP_AKRJ_G0011576	pseudogene	Chr2:39443319-39443671 (+)
BALB/cJ	MGP_BALBcJ_G0011591	pseudogene	Chr2:38321541-38321893 (+)
C3H/HeJ	MGP_C3HHeJ_G0011477	pseudogene	Chr2:39401948-39402300 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011884	pseudogene	Chr2:41023146-41023498 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010413	pseudogene	Chr2:36704386-36704740 (+)
CAST/EiJ	MGP_CASTEiJ_G0011273	pseudogene	Chr2:39333371-39333723 (+)
CBA/J	MGP_CBAJ_G0011448	pseudogene	Chr2:42619547-42619899 (+)
DBA/2J	MGP_DBA2J_G0011505	pseudogene	Chr2:37966779-37967131 (+)
FVB/NJ	MGP_FVBNJ_G0011506	pseudogene	Chr2:37801958-37802310 (+)
LP/J	MGP_LPJ_G0011570	pseudogene	Chr2:39729889-39730241 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011505	pseudogene	Chr2:42359112-42359464 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011875	pseudogene	Chr2:39340630-39340982 (+)
PWK/PhJ	MGP_PWKPhJ_G0011131	pseudogene	Chr2:37859146-37859498 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010951	pseudogene	Chr2:39416811-39417163 (+)
WSB/EiJ	MGP_WSBEiJ_G0011297	pseudogene	Chr2:39498145-39498497 (+)

Homology

• Gene Tree
  Gm13460
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000083260 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083260	Ensembl Gene Model | MGI Sequence Detail	353	C57BL/6J
transcript	ENSMUST00000121274	Ensembl | MGI Sequence Detail	353	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;