Gm12403 Pseudogene Detail

Summary

• Symbol
  Gm12403
• Name
  predicted gene 12403

• Feature Type
  pseudogene
• IDs
  MGI:3650109
  NCBI Gene: 102637678
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:41168646-41169604 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 21.09 cM

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650109	pseudogene	Chr4:41168646-41169604 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012625	pseudogene	Chr4:39098250-39099208 (+)
A/J	MGP_AJ_G0012616	pseudogene	Chr4:37615409-37616367 (+)
AKR/J	MGP_AKRJ_G0012584	pseudogene	Chr4:38577927-38578885 (+)
BALB/cJ	MGP_BALBcJ_G0012600	pseudogene	Chr4:37944963-37945921 (+)
C3H/HeJ	MGP_C3HHeJ_G0012462	pseudogene	Chr4:39124615-39125573 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012918	pseudogene	Chr4:40544889-40545847 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011238	pseudogene	Chr4:35265627-35266618 (+)
CAST/EiJ	MGP_CASTEiJ_G0012217	pseudogene	Chr4:38796077-38797032 (+)
CBA/J	MGP_CBAJ_G0012440	pseudogene	Chr4:41935497-41938564 (+)
DBA/2J	MGP_DBA2J_G0012498	pseudogene	Chr4:37536416-37537374 (+)
FVB/NJ	MGP_FVBNJ_G0012499	pseudogene	Chr4:36868971-36869929 (+)
LP/J	MGP_LPJ_G0012567	pseudogene	Chr4:39165245-39166203 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012503	pseudogene	Chr4:45246644-45247602 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012919	pseudogene	Chr4:38700335-38701299 (+)
PWK/PhJ	MGP_PWKPhJ_G0012046	pseudogene	Chr4:37548813-37550205 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011862	pseudogene	Chr4:38403678-38404645 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm12403
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Gm12403
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000082186 (Evidence)
• NCBI Gene
  102637678

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082186	Ensembl Gene Model | MGI Sequence Detail	959	C57BL/6J
transcript	ENSMUST00000121384	Ensembl | MGI Sequence Detail	959	Not Applicable

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;