Gm12402 Pseudogene Detail

Summary

• Symbol
  Gm12402
• Name
  predicted gene 12402

• Feature Type
  pseudogene
• IDs
  MGI:3650110
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:41132511-41132844 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 21.02 cM

Strain
Comparison

• SNPs within 2kb
  95 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650110	pseudogene	Chr4:41132511-41132844 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012624	pseudogene	Chr4:39058240-39058573 (-)
A/J	MGP_AJ_G0012615	pseudogene	Chr4:37577946-37578279 (-)
AKR/J	MGP_AKRJ_G0012583	pseudogene	Chr4:38541944-38542277 (-)
BALB/cJ	MGP_BALBcJ_G0012599	pseudogene	Chr4:37908464-37908797 (-)
C3H/HeJ	MGP_C3HHeJ_G0012461	pseudogene	Chr4:39084429-39084762 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012917	pseudogene	Chr4:40504470-40504803 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011237	pseudogene	Chr4:35230164-35230498 (-)
CAST/EiJ	MGP_CASTEiJ_G0012216	pseudogene	Chr4:38754678-38755011 (-)
CBA/J	MGP_CBAJ_G0012439	pseudogene	Chr4:41885463-41885796 (-)
DBA/2J	MGP_DBA2J_G0012497	pseudogene	Chr4:37498767-37499100 (-)
FVB/NJ	MGP_FVBNJ_G0012498	pseudogene	Chr4:36831239-36831572 (-)
LP/J	MGP_LPJ_G0012566	pseudogene	Chr4:39126903-39127236 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012502	pseudogene	Chr4:45203596-45203929 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012918	pseudogene	Chr4:38658260-38658593 (-)
PWK/PhJ	MGP_PWKPhJ_G0012045	pseudogene	Chr4:37510990-37511323 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011861	pseudogene	Chr4:38360875-38361209 (-)
WSB/EiJ	MGP_WSBEiJ_G0012240	pseudogene	Chr4:38638430-38638763 (-)

Homology

• Gene Tree
  Gm12402
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Gm12402
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000081437 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081437	Ensembl Gene Model | MGI Sequence Detail	334	C57BL/6J
transcript	ENSMUST00000120536	Ensembl | MGI Sequence Detail	334	Not Applicable

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;