Gm12497 Pseudogene Detail

Summary

• Symbol
  Gm12497
• Name
  predicted pseudogene 12497

• Feature Type
  pseudogene
• IDs
  MGI:3650111
  NCBI Gene: 624701
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:107886948-107887184 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 46.83 cM

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650111	pseudogene	Chr3:107886901-107887270 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012342	pseudogene	Chr3:109507320-109507556 (+)
A/J	MGP_AJ_G0012337	pseudogene	Chr3:106035487-106035723 (+)
AKR/J	MGP_AKRJ_G0012303	pseudogene	Chr3:108617072-108617308 (+)
BALB/cJ	MGP_BALBcJ_G0012320	pseudogene	Chr3:105725849-105726085 (+)
C3H/HeJ	MGP_C3HHeJ_G0012184	pseudogene	Chr3:108958016-108958252 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012632	pseudogene	Chr3:113595795-113596031 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012144	pseudogene	Chr7:33673324-33673562 (-)
CAST/EiJ	MGP_CASTEiJ_G0011952	pseudogene	Chr3:108341058-108341294 (+)
CBA/J	MGP_CBAJ_G0012163	pseudogene	Chr3:117456822-117457058 (+)
DBA/2J	MGP_DBA2J_G0012219	pseudogene	Chr3:105221938-105222174 (+)
FVB/NJ	MGP_FVBNJ_G0012222	pseudogene	Chr3:103102068-103102304 (+)
LP/J	MGP_LPJ_G0012289	pseudogene	Chr3:110928397-110928633 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012225	pseudogene	Chr3:123519817-123520053 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012637	pseudogene	Chr3:108213147-108213383 (+)
PWK/PhJ	MGP_PWKPhJ_G0011795	pseudogene	Chr3:104969357-104969593 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011610	pseudogene	Chr3:106348795-106349031 (+)
WSB/EiJ	MGP_WSBEiJ_G0011983	pseudogene	Chr3:108736126-108736362 (+)

Homology

• Gene Tree
  Gm12497
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12497
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000049231 (Evidence)
• NCBI Gene
  624701

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000049231	Ensembl Gene Model | MGI Sequence Detail	237	C57BL/6J
transcript	ENSMUST00000138778	Ensembl | MGI Sequence Detail	237	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm12497:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31229	Chr3:107886916-107886929 (+)	-25 bp