Gm11920 Pseudogene Detail

Summary

• Symbol
  Gm11920
• Name
  predicted gene 11920

• Feature Type
  pseudogene
• IDs
  MGI:3650119
  NCBI Gene: 619906
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:30701973-30702535 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 13.39 cM

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650119	pseudogene	Chr4:30701964-30702606 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012586	pseudogene	Chr4:28125678-28126240 (-)
A/J	MGP_AJ_G0012577	pseudogene	Chr4:27128585-27129147 (-)
AKR/J	MGP_AKRJ_G0012543	pseudogene	Chr4:27834970-27835532 (-)
BALB/cJ	MGP_BALBcJ_G0012563	pseudogene	Chr4:27357269-27357831 (-)
C3H/HeJ	MGP_C3HHeJ_G0012425	pseudogene	Chr4:28077300-28077862 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012878	pseudogene	Chr4:29244333-29244895 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011206	pseudogene	Chr4:25232199-25232761 (-)
CAST/EiJ	MGP_CASTEiJ_G0012181	pseudogene	Chr4:27804415-27804975 (-)
CBA/J	MGP_CBAJ_G0012403	pseudogene	Chr4:30194962-30195524 (-)
DBA/2J	MGP_DBA2J_G0012456	pseudogene	Chr4:27124026-27124588 (-)
FVB/NJ	MGP_FVBNJ_G0012460	pseudogene	Chr4:26575321-26575883 (-)
LP/J	MGP_LPJ_G0012530	pseudogene	Chr4:28190114-28190676 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012465	pseudogene	Chr4:32743295-32743857 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012879	pseudogene	Chr4:27795575-27796137 (-)
PWK/PhJ	MGP_PWKPhJ_G0012012	pseudogene	Chr4:27044529-27045091 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011830	pseudogene	Chr4:27628444-27629002 (-)
WSB/EiJ	MGP_WSBEiJ_G0012205	pseudogene	Chr4:27822603-27823165 (-)

Homology

• Gene Tree
  Gm11920
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Gm11920
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000082949 (Evidence)
• NCBI Gene
  619906

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082949	Ensembl Gene Model | MGI Sequence Detail	563	C57BL/6J
transcript	ENSMUST00000118491	Ensembl | MGI Sequence Detail	563	Not Applicable

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11920:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr41128	Chr4:30702742-30702747 (-)	-210 bp