Gm12969 Pseudogene Detail

Summary

• Symbol
  Gm12969
• Name
  predicted gene 12969

• Feature Type
  pseudogene
• IDs
  MGI:3650134
  NCBI Gene: 667354
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:128762186-128763189 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 62.36 cM

Strain
Comparison

• SNPs within 2kb
  70 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650134	pseudogene	Chr4:128761747-128763215 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012886	pseudogene	Chr4:130707133-130709455 (-)
A/J	MGP_AJ_G0012870	pseudogene	Chr4:125538499-125539372 (-)
AKR/J	MGP_AKRJ_G0012841	pseudogene	Chr4:129012408-129013253 (-)
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0012706	pseudogene	Chr4:129065579-129066582 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0011436	pseudogene	Chr4:118673019-118674020 (-)
CAST/EiJ	MGP_CASTEiJ_G0012455	pseudogene	Chr4:127233125-127234019 (-)
CBA/J	MGP_CBAJ_G0012681	pseudogene	Chr4:138961481-138962484 (-)
DBA/2J	MGP_DBA2J_G0012743	pseudogene	Chr4:125966954-125968208 (-)
FVB/NJ	MGP_FVBNJ_G0012751	pseudogene	Chr4:124718374-124719939 (-)
LP/J	MGP_LPJ_G0012821	pseudogene	Chr4:131019667-131020670 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012761	pseudogene	Chr4:143884561-143886730 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013204	pseudogene	Chr4:129381574-129382577 (-)
PWK/PhJ	MGP_PWKPhJ_G0012275	pseudogene	Chr4:122533591-122534597 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012089	pseudogene	Chr4:125233503-125234506 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm12969
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12969
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000084011 (Evidence)
• NCBI Gene
  667354

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084011	Ensembl Gene Model | MGI Sequence Detail	1004	C57BL/6J
transcript	ENSMUST00000120199	Ensembl | MGI Sequence Detail	1004	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;