Gm13487 Pseudogene Detail

Summary

• Symbol
  Gm13487
• Name
  predicted gene 13487

• Feature Type
  pseudogene
• IDs
  MGI:3650141
  NCBI Gene: 666781
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:50412136-50412999 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 29.01 cM

Strain
Comparison

• SNPs within 2kb
  140 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650141	pseudogene	Chr2:50411818-50413050 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011628	pseudogene	Chr2:49760764-49761626 (-)
A/J	MGP_AJ_G0011627	pseudogene	Chr2:47861931-47862794 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0011607	pseudogene	Chr2:47977592-47978455 (-)
C3H/HeJ	MGP_C3HHeJ_G0011493	pseudogene	Chr2:49216155-49217018 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011900	pseudogene	Chr2:51244109-51245088 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0012367	pseudogene	Chr9:11493721-11498034 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0011464	pseudogene	Chr2:53164100-53164963 (-)
DBA/2J	MGP_DBA2J_G0011521	pseudogene	Chr2:47484479-47485342 (-)
FVB/NJ	MGP_FVBNJ_G0011522	pseudogene	Chr2:47219619-47220484 (-)
LP/J	MGP_LPJ_G0011586	pseudogene	Chr2:49667333-49668196 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011521	pseudogene	Chr2:54240647-54241510 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011891	pseudogene	Chr2:49133586-49134449 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0010967	pseudogene	Chr2:49311185-49312046 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm13487
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13487
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000083449 (Evidence)
• NCBI Gene
  666781

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083449	Ensembl Gene Model | MGI Sequence Detail	864	C57BL/6J
transcript	ENSMUST00000122240	Ensembl | MGI Sequence Detail	864	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm13487:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr24016	Chr2:50413040-50413050 (-)	-46 bp