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Trabd2b Gene Detail
Summary
  • Symbol
    Trabd2b
  • Name
    TraB domain containing 2B
  • Synonyms
    Gm12824, Hkat
  • Feature Type
    protein coding gene
  • IDs
    MGI:3650152
    NCBI Gene: 666048
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:114263921-114472295 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 51.84 cM
Strain
Comparison
more
  • SNPs within 2kb
    5199 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3650152
 protein coding gene Chr4:114263394-114472295 (+)
129S1/SvImJ MGP_129S1SvImJ_G0028588
 protein coding gene Chr4:115138398-115359807 (+)
A/J MGP_AJ_G0028550
 protein coding gene Chr4:110736134-110945573 (+)
AKR/J MGP_AKRJ_G0028498
 protein coding gene Chr4:113026716-113249549 (+)
BALB/cJ MGP_BALBcJ_G0028570
 protein coding gene Chr4:111383443-111593497 (+)
C3H/HeJ MGP_C3HHeJ_G0028284
 protein coding gene Chr4:114663083-114874954 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029014
 protein coding gene Chr4:119606868-119833208 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0026299
 protein coding gene Chr4:104851430-105059409 (+)
CAST/EiJ MGP_CASTEiJ_G0027721
 protein coding gene Chr4:112052209-112279821 (+)
CBA/J MGP_CBAJ_G0028252
 protein coding gene Chr4:122717804-122938845 (+)
DBA/2J MGP_DBA2J_G0028401
 protein coding gene Chr4:111402332-111610940 (+)
FVB/NJ MGP_FVBNJ_G0028369
 protein coding gene Chr4:109868659-110075846 (+)
LP/J MGP_LPJ_G0028502
 protein coding gene Chr4:115345838-115559793 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028394
 protein coding gene Chr4:127874651-128091525 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029050
 protein coding gene Chr4:114276101-114496354 (+)
PWK/PhJ MGP_PWKPhJ_G0027446
 protein coding gene Chr4:108176841-108394919 (+)
SPRET/EiJ MGP_SPRETEiJ_G0027270
 protein coding gene Chr4:110686197-110892902 (+)
WSB/EiJ MGP_WSBEiJ_G0027799
 protein coding gene Chr4:114066897-114282228 (+)



Homology
more
  • Human Ortholog
    TRABD2B, TraB domain containing 2B
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRABD2B, TraB domain containing 2B
  • Synonyms
    TIKI2
  • Links
    NCBI Gene ID: 388630
    neXtProt AC: NX_A6NFA1
    UniProt: A6NFA1

  • Chr Location
    1p33; chr1:47760528-47997385 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    14 phenotypes from 1 allele in 1 genetic background
    10 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    23
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    756
  • Tissues
    38
  • cDNA Data
    24
  • Literature Summary
    3
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000070867 Ensembl Gene Model | MGI Sequence Detail 208375 C57BL/6J ±  kb
    transcript ENSMUST00000094894 Ensembl | MGI Sequence Detail 6617 Not Applicable  
    polypeptide ENSMUSP00000092494 Ensembl | MGI Sequence Detail 517 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 27
      cDNA 24
      Primer pair 2
      Other 1

      Microarray probesets 3
    References
    more
    • Summaries
      All 33
      Developmental Gene Expression 3
      Gene Ontology 5
      Phenotypes 10
    • Earliest
      J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory