Arhgap27os2 Gene Detail

Summary

• Symbol
  Arhgap27os2
• Name
  Rho GTPase activating protein 27, opposite strand 2
• Synonyms
  Gm11647

• Feature Type
  antisense lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3650160
  NCBI Gene: 653029
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:103246527-103251918 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 67.07 cM

Strain
Comparison

• SNPs within 2kb
  209 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650160	antisense lncRNA gene	Chr11:103246527-103251918 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003073	antisense lncRNA gene	Chr11:106422557-106427950 (+)
A/J	MGP_AJ_G0003050	antisense lncRNA gene	Chr11:101908544-101913935 (+)
AKR/J	MGP_AKRJ_G0003031	antisense lncRNA gene	Chr11:105048471-105053863 (+)
BALB/cJ	MGP_BALBcJ_G0003037	antisense lncRNA gene	Chr11:102373600-102378993 (+)
C3H/HeJ	MGP_C3HHeJ_G0002993	antisense lncRNA gene	Chr11:105272667-105278060 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003179	antisense lncRNA gene	Chr11:109726974-109732363 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002717	antisense lncRNA gene	Chr11:99315555-99320919 (+)
CAST/EiJ	MGP_CASTEiJ_G0002963	antisense lncRNA gene	Chr11:106291838-106299012 (+)
CBA/J	MGP_CBAJ_G0002990	antisense lncRNA gene	Chr11:114293623-114299014 (+)
DBA/2J	MGP_DBA2J_G0002996	antisense lncRNA gene	Chr11:101414157-101419550 (+)
FVB/NJ	MGP_FVBNJ_G0003015	antisense lncRNA gene	Chr11:100959695-100965096 (+)
LP/J	MGP_LPJ_G0003072	antisense lncRNA gene	Chr11:106934787-106940180 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003003	antisense lncRNA gene	Chr11:113667385-113672778 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003183	antisense lncRNA gene	Chr11:105433571-105438964 (+)
PWK/PhJ	MGP_PWKPhJ_G0002921	antisense lncRNA gene	Chr11:102490509-102496362 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002865	antisense lncRNA gene	Chr11:105192213-105197634 (+)
WSB/EiJ	MGP_WSBEiJ_G0002993	antisense lncRNA gene	Chr11:105436378-105441771 (+)

Homology

• Gene Tree
  Arhgap27os2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  1
• Targeted
  1
• Genomic Mutations
  1 involving Arhgap27os2
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000085360 (Evidence)
• NCBI Gene
  653029

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085360	Ensembl Gene Model | MGI Sequence Detail	5392	C57BL/6J
transcript	ENSMUST00000123812	Ensembl | MGI Sequence Detail	1390	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 14

  Phenotypes 6
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Arhgap27os2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105341	Chr11:103246520-103246533 (+)	0 bp
Tssr105342	Chr11:103251293-103251338 (+)	4,789 bp