Gm12535 Pseudogene Detail

Summary

• Symbol
  Gm12535
• Name
  predicted gene 12535

• Feature Type
  pseudogene
• IDs
  MGI:3650178
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:109814700-109815183 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 48.49 cM

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650178	pseudogene	Chr3:109814700-109815183 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012350	pseudogene	Chr3:111543221-111543704 (+)
A/J	MGP_AJ_G0012345	pseudogene	Chr3:107975987-107976470 (+)
AKR/J	MGP_AKRJ_G0012310	pseudogene	Chr3:110628499-110628982 (+)
BALB/cJ	MGP_BALBcJ_G0012328	pseudogene	Chr3:107686071-107686554 (+)
C3H/HeJ	MGP_C3HHeJ_G0012191	pseudogene	Chr3:110982486-110982969 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012640	pseudogene	Chr3:115663659-115664142 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011012	pseudogene	Chr3:104062240-104062719 (+)
CAST/EiJ	MGP_CASTEiJ_G0011958	pseudogene	Chr3:110393589-110394072 (+)
CBA/J	MGP_CBAJ_G0012170	pseudogene	Chr3:119640847-119641330 (+)
DBA/2J	MGP_DBA2J_G0012226	pseudogene	Chr3:107163213-107163696 (+)
FVB/NJ	MGP_FVBNJ_G0012229	pseudogene	Chr3:105018323-105018806 (+)
LP/J	MGP_LPJ_G0012296	pseudogene	Chr3:112973243-112973726 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012232	pseudogene	Chr3:125652023-125652506 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012645	pseudogene	Chr3:110227447-110227930 (+)
PWK/PhJ	MGP_PWKPhJ_G0011801	pseudogene	Chr3:106923144-106923627 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011616	pseudogene	Chr3:108403742-108404225 (+)
WSB/EiJ	MGP_WSBEiJ_G0011990	pseudogene	Chr3:110771506-110771989 (+)

Homology

• Gene Tree
  Gm12535
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12535
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000082624 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082624	Ensembl Gene Model | MGI Sequence Detail	484	C57BL/6J
transcript	ENSMUST00000121025	Ensembl | MGI Sequence Detail	484	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;