Gm11377 Gene Detail

Summary

• Symbol
  Gm11377
• Name
  predicted gene 11377

• Feature Type
  lncRNA gene
• IDs
  MGI:3650186
  NCBI Gene: 105245413
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:31748612-31750318 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 13.46 cM

Strain
Comparison

• SNPs within 2kb
  164 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650186	lncRNA gene	Chr13:31748612-31757545 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005441	lincRNA gene	Chr13:29488339-29498135 (+)
A/J	MGP_AJ_G0005427	lincRNA gene	Chr13:28699339-28708176 (+)
AKR/J	MGP_AKRJ_G0005406	lincRNA gene	Chr13:29327906-29336698 (+)
BALB/cJ	MGP_BALBcJ_G0005408	lincRNA gene	Chr13:28797564-28806374 (+)
C3H/HeJ	MGP_C3HHeJ_G0005356	lincRNA gene	Chr13:29332855-29341653 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005563	lincRNA gene	Chr13:30477148-30485951 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004941	lincRNA gene	Chr13:27076171-27084838 (+)
CAST/EiJ	MGP_CASTEiJ_G0005299	lincRNA gene	Chr13:28999466-29010359 (+)
CBA/J	MGP_CBAJ_G0005345	lincRNA gene	Chr13:31791623-31804572 (+)
DBA/2J	MGP_DBA2J_G0005361	lincRNA gene	Chr13:28225687-28234535 (+)
FVB/NJ	MGP_FVBNJ_G0005387	lincRNA gene	Chr13:27835514-27844319 (+)
LP/J	MGP_LPJ_G0005444	lincRNA gene	Chr13:29710761-29719581 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005370	lincRNA gene	Chr13:31885905-31894700 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005563	lincRNA gene	Chr13:28981135-28989960 (+)
PWK/PhJ	MGP_PWKPhJ_G0005248	lincRNA gene	Chr13:28381478-28390497 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005169	lincRNA gene	Chr13:27877705-27886585 (+)
WSB/EiJ	MGP_WSBEiJ_G0005348	lincRNA gene	Chr13:29288182-29296985 (+)

Homology

• Gene Tree
  Gm11377
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm11377
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000087220 (Evidence)
• NCBI Gene
  105245413

Representative Sequences			Length	Strain/Species
genomic	105245413	NCBI Gene Model | MGI Sequence Detail	1707	C57BL/6J
transcript	AK085428	GenBank | ENA | DDBJ | MGI Sequence Detail	670	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 15

  Phenotypes 8
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:141688 Goldsworthy M, et al., Role of the transcription factor sox4 in insulin secretion and impaired glucose tolerance. Diabetes. 2008 Aug;57(8):2234-44