Gm13034 Pseudogene Detail

Summary

• Symbol
  Gm13034
• Name
  predicted gene 13034

• Feature Type
  pseudogene
• IDs
  MGI:3650252
  NCBI Gene: 627585
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:146004094-146005288 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 78.36 cM

Strain
Comparison

• SNPs within 2kb
  43 from dbSNP Build 142
• Strain Annotations
  4

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650252	pseudogene	Chr4:146004094-146007498 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0012335	pseudogene	Chr8:72193935-72232729 (-)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0014475	pseudogene	Chr8:80537528-80579955 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0013143	pseudogene	Chr8:79343124-79387120 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm13034
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13034
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000082195 (Evidence)
• NCBI Gene
  627585

Representative Sequences			Length	Strain/Species
genomic	627585	NCBI Gene Model | MGI Sequence Detail	1195	C57BL/6J
transcript	NR_030771	RefSeq | MGI Sequence Detail	1195	C57BL/6
polypeptide	Q3URV3	UniProt | EBI | MGI Sequence Detail	186	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR014001 Helicase superfamily 1/2, ATP-binding domain
  IPR027417 P-loop containing nucleoside triphosphate hydrolase
  IPR038718 SNF2-like, N-terminal domain superfamily
  IPR000330 SNF2, N-terminal

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;