Gm13664 Pseudogene Detail

Summary

• Symbol
  Gm13664
• Name
  predicted gene 13664

• Feature Type
  pseudogene
• IDs
  MGI:3650263
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:73006955-73007299 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 43.43 cM

Strain
Comparison

• SNPs within 2kb
  62 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650263	pseudogene	Chr2:73006955-73007299 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011699	pseudogene	Chr2:73443737-73444081 (+)
A/J	MGP_AJ_G0011695	pseudogene	Chr2:70545212-70545556 (+)
AKR/J	MGP_AKRJ_G0011661	pseudogene	Chr2:72492418-72492762 (+)
BALB/cJ	MGP_BALBcJ_G0011676	pseudogene	Chr2:70743649-70743993 (+)
C3H/HeJ	MGP_C3HHeJ_G0011562	pseudogene	Chr2:72675380-72675724 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011970	pseudogene	Chr2:75625696-75626040 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010480	pseudogene	Chr2:67761984-67762330 (+)
CAST/EiJ	MGP_CASTEiJ_G0011348	pseudogene	Chr2:72938505-72938849 (+)
CBA/J	MGP_CBAJ_G0011535	pseudogene	Chr2:78396554-78396898 (+)
DBA/2J	MGP_DBA2J_G0011587	pseudogene	Chr2:70152369-70152713 (+)
FVB/NJ	MGP_FVBNJ_G0011592	pseudogene	Chr2:69568033-69568377 (+)
LP/J	MGP_LPJ_G0011655	pseudogene	Chr2:73319094-73319438 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011592	pseudogene	Chr2:80331758-80332102 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011963	pseudogene	Chr2:72573813-72574157 (+)
PWK/PhJ	MGP_PWKPhJ_G0011205	pseudogene	Chr2:70071016-70071360 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011028	pseudogene	Chr2:72812232-72812562 (+)
WSB/EiJ	MGP_WSBEiJ_G0011376	pseudogene	Chr2:73021938-73022282 (+)

Homology

• Gene Tree
  Gm13664
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Targeted
  5
• Genomic Mutations
  6 involving Gm13664
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000083976 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083976	Ensembl Gene Model | MGI Sequence Detail	345	C57BL/6J
transcript	ENSMUST00000117304	Ensembl | MGI Sequence Detail	345	Not Applicable

References

• Summaries
  All 16

  Phenotypes 13
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:239094 Schep R, et al., Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape. Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):E7720-E7729