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Ccdc200 Gene Detail
Summary
  • Symbol
    Ccdc200
  • Name
    coiled coil domain containing 200
  • Synonyms
    Gm11634
  • Feature Type
    protein coding gene
  • IDs
    MGI:3650266
    NCBI Gene: 667306
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:101484569-101490082 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 65.47 cM
Strain
Comparison
more
  • SNPs within 2kb
    203 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3650266
 protein coding gene Chr11:101484569-101490140 (-)
129S1/SvImJ MGP_129S1SvImJ_G0003064
 antisense lncRNA gene Chr11:104479528-104485025 (-)
A/J MGP_AJ_G0003041
 antisense lncRNA gene Chr11:100078719-100084085 (-)
AKR/J MGP_AKRJ_G0003022
 antisense lncRNA gene Chr11:103189365-103194872 (-)
BALB/cJ MGP_BALBcJ_G0003028
 antisense lncRNA gene Chr11:100569508-100574912 (-)
C3H/HeJ MGP_C3HHeJ_G0002984
 antisense lncRNA gene Chr11:103364079-103369577 (-)
C57BL/6NJ MGP_C57BL6NJ_G0003170
 antisense lncRNA gene Chr11:107751654-107760557 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0002708
 antisense lncRNA gene Chr11:97471963-97477841 (-)
CAST/EiJ MGP_CASTEiJ_G0002954
 antisense lncRNA gene Chr11:104350440-104355993 (-)
CBA/J MGP_CBAJ_G0002981
 antisense lncRNA gene Chr11:112181562-112187073 (-)
DBA/2J MGP_DBA2J_G0002987
 antisense lncRNA gene Chr11:99598756-99604266 (-)
FVB/NJ MGP_FVBNJ_G0003006
 antisense lncRNA gene Chr11:99144145-99149649 (-)
LP/J MGP_LPJ_G0003063
 antisense lncRNA gene Chr11:105009733-105016495 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0002994
 antisense lncRNA gene Chr11:111744684-111750185 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0003174
 antisense lncRNA gene Chr11:103523788-103529833 (-)
PWK/PhJ MGP_PWKPhJ_G0002912
 antisense lncRNA gene Chr11:100663788-100669467 (-)
SPRET/EiJ MGP_SPRETEiJ_G0002856
 antisense lncRNA gene Chr11:103255166-103262838 (-)
WSB/EiJ MGP_WSBEiJ_G0002984
 antisense lncRNA gene Chr11:103518143-103524615 (-)



Homology
more
  • Human Ortholog
    CCDC200, coiled-coil domain containing 200
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC200, coiled-coil domain containing 200
  • Synonyms
    LINC00854, TMEM106A-AS1
  • Links
    NCBI Gene ID: 100874261
    UniProt: A0A1B0GVQ3

  • Chr Location
    chr17:43216941-43305397 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000085486 Ensembl Gene Model | MGI Sequence Detail 5514 C57BL/6J ±  kb
transcript ENSMUST00000209862 Ensembl | MGI Sequence Detail 573 Not Applicable  
polypeptide ENSMUSP00000148108 Ensembl | MGI Sequence Detail 172 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
Other
Accession IDs
less
MGI:7286227
References
more
  • Summaries
    All 16
    Phenotypes 7
  • Earliest
    J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
  • Latest
    J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory