Gm13673 Pseudogene Detail

Summary

• Symbol
  Gm13673
• Name
  predicted gene 13673

• Feature Type
  pseudogene
• IDs
  MGI:3650280
  NCBI Gene: 100416064
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:79190206-79190735 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 47.47 cM

Strain
Comparison

• SNPs within 2kb
  135 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650280	pseudogene	Chr2:79190206-79190739 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011718	pseudogene	Chr2:79903719-79904249 (+)
A/J	MGP_AJ_G0011712	pseudogene	Chr2:76815770-76816300 (+)
AKR/J	MGP_AKRJ_G0011679	pseudogene	Chr2:78827274-78827804 (+)
BALB/cJ	MGP_BALBcJ_G0011692	pseudogene	Chr2:76941400-76941930 (+)
C3H/HeJ	MGP_C3HHeJ_G0011579	pseudogene	Chr2:79050786-79051316 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011988	pseudogene	Chr2:82270466-82270996 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010497	pseudogene	Chr2:74065231-74065905 (+)
CAST/EiJ	MGP_CASTEiJ_G0011366	pseudogene	Chr2:79471003-79471533 (+)
CBA/J	MGP_CBAJ_G0011554	pseudogene	Chr2:85221489-85222019 (+)
DBA/2J	MGP_DBA2J_G0011604	pseudogene	Chr2:76366285-76366815 (+)
FVB/NJ	MGP_FVBNJ_G0011609	pseudogene	Chr2:75734626-75735156 (+)
LP/J	MGP_LPJ_G0011675	pseudogene	Chr2:79747914-79748444 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011610	pseudogene	Chr2:87065912-87066442 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011984	pseudogene	Chr2:78996812-78997342 (+)
PWK/PhJ	MGP_PWKPhJ_G0011219	pseudogene	Chr2:76312325-76312975 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011043	pseudogene	Chr2:79256118-79256774 (+)
WSB/EiJ	MGP_WSBEiJ_G0011393	pseudogene	Chr2:79622941-79623471 (+)

Homology

• Gene Tree
  Gm13673
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm13673
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000081284 (Evidence)
• NCBI Gene
  100416064

Representative Sequences			Length	Strain/Species
genomic	100416064	NCBI Gene Model | MGI Sequence Detail	530	C57BL/6J

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087