Gm11969 Pseudogene Detail

Summary

• Symbol
  Gm11969
• Name
  predicted gene 11969

• Feature Type
  pseudogene
• IDs
  MGI:3650290
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:6132679-6133034 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 3.92 cM

Strain
Comparison

• SNPs within 2kb
  72 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650290	pseudogene	Chr11:6132679-6133034 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010569	pseudogene	Chr11:3274705-3275060 (-)
A/J	MGP_AJ_G0010562	pseudogene	Chr11:3145492-3145847 (-)
AKR/J	MGP_AKRJ_G0010522	pseudogene	Chr11:3300934-3301289 (-)
BALB/cJ	MGP_BALBcJ_G0010537	pseudogene	Chr11:3131285-3131640 (-)
C3H/HeJ	MGP_C3HHeJ_G0010459	pseudogene	Chr11:3174522-3174877 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010806	pseudogene	Chr11:3370413-3370768 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009479	pseudogene	Chr11:3042087-3042442 (-)
CAST/EiJ	MGP_CASTEiJ_G0010284	pseudogene	Chr11:3154101-3154456 (-)
CBA/J	MGP_CBAJ_G0010431	pseudogene	Chr11:3762988-3763343 (-)
DBA/2J	MGP_DBA2J_G0010461	pseudogene	Chr11:3058404-3058759 (-)
FVB/NJ	MGP_FVBNJ_G0010480	pseudogene	Chr11:3078455-3078810 (-)
LP/J	MGP_LPJ_G0010551	pseudogene	Chr11:3353367-3353722 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010455	pseudogene	Chr11:3335817-3336172 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010784	pseudogene	Chr11:3314180-3314535 (-)
PWK/PhJ	MGP_PWKPhJ_G0010184	pseudogene	Chr11:3086027-3086382 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010000	pseudogene	Chr11:3265344-3265699 (-)
WSB/EiJ	MGP_WSBEiJ_G0010345	pseudogene	Chr11:3150615-3150970 (-)

Homology

• Gene Tree
  Gm11969
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000083209 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083209	Ensembl Gene Model | MGI Sequence Detail	356	C57BL/6J
transcript	ENSMUST00000118848	Ensembl | MGI Sequence Detail	356	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;