Gm13617 Gene Detail

Summary

• Symbol
  Gm13617
• Name
  predicted gene 13617

• Feature Type
  lncRNA gene
• IDs
  MGI:3650300
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:65774643-65784414 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 38.87 cM

Strain
Comparison

• SNPs within 2kb
  340 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650300	lncRNA gene	Chr2:65774643-65784414 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003573	antisense lncRNA gene	Chr2:65773755-65783886 (-)
A/J	MGP_AJ_G0003554	antisense lncRNA gene	Chr2:63226279-63235793 (-)
AKR/J	MGP_AKRJ_G0003532	antisense lncRNA gene	Chr2:64942467-64951999 (-)
BALB/cJ	MGP_BALBcJ_G0003543	antisense lncRNA gene	Chr2:63393309-63406134 (-)
C3H/HeJ	MGP_C3HHeJ_G0003490	antisense lncRNA gene	Chr2:65125988-65136134 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003681	antisense lncRNA gene	Chr2:67709535-67721278 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003190	antisense lncRNA gene	Chr2:60575110-60584323 (-)
CAST/EiJ	MGP_CASTEiJ_G0003453	antisense lncRNA gene	Chr2:65150791-65161391 (-)
CBA/J	MGP_CBAJ_G0003487	antisense lncRNA gene	Chr2:70238449-70250298 (-)
DBA/2J	MGP_DBA2J_G0003495	antisense lncRNA gene	Chr2:62860220-62869410 (-)
FVB/NJ	MGP_FVBNJ_G0003515	antisense lncRNA gene	Chr2:62288102-62297482 (-)
LP/J	MGP_LPJ_G0003568	antisense lncRNA gene	Chr2:65601218-65612714 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003503	antisense lncRNA gene	Chr2:72203511-72214415 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003684	antisense lncRNA gene	Chr2:64997760-65009491 (-)
PWK/PhJ	MGP_PWKPhJ_G0003408	antisense lncRNA gene	Chr2:62679222-62690075 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003353	antisense lncRNA gene	Chr2:65164787-65174706 (-)
WSB/EiJ	MGP_WSBEiJ_G0003488	antisense lncRNA gene	Chr2:65371758-65382819 (-)

Homology

• Gene Tree
  Gm13617
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13617
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000085160 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085160	Ensembl Gene Model | MGI Sequence Detail	9772	C57BL/6J
transcript	ENSMUST00000155350	Ensembl | MGI Sequence Detail	675	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;