Gm13378 Pseudogene Detail

Summary

• Symbol
  Gm13378
• Name
  predicted gene 13378

• Feature Type
  pseudogene
• IDs
  MGI:3650302
  NCBI Gene: 100416185
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:21248916-21249251 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 14.85 cM

Strain
Comparison

• SNPs within 2kb
  158 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650302	pseudogene	Chr2:21248913-21249252 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0011550	pseudogene	Chr2:18286146-18286481 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0011531	pseudogene	Chr2:18347387-18347722 (+)
C3H/HeJ	MGP_C3HHeJ_G0011416	pseudogene	Chr2:18814819-18815154 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011822	pseudogene	Chr2:19607118-19607453 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009042	pseudogene	Chr1:25763749-25764036 (-)
CAST/EiJ	MGP_CASTEiJ_G0009797	pseudogene	Chr1:28738529-28738816 (-)
CBA/J	MGP_CBAJ_G0011388	pseudogene	Chr2:20388277-20388612 (+)
DBA/2J	MGP_DBA2J_G0011446	pseudogene	Chr2:18201206-18201541 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0011511	pseudogene	Chr2:18892551-18892886 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0011810	pseudogene	Chr2:18832936-18833271 (+)
PWK/PhJ	MGP_PWKPhJ_G0009700	pseudogene	Chr1:27453580-27453867 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009517	pseudogene	Chr1:28698646-28698933 (-)
WSB/EiJ	MGP_WSBEiJ_G0011239	pseudogene	Chr2:18916770-18917105 (+)

Homology

• Gene Tree
  Gm13378
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000084071 (Evidence)
• NCBI Gene
  100416185

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084071	Ensembl Gene Model | MGI Sequence Detail	336	C57BL/6J
transcript	ENSMUST00000117483	Ensembl | MGI Sequence Detail	336	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;