Gm11952 Pseudogene Detail

Summary

• Symbol
  Gm11952
• Name
  predicted gene 11952

• Feature Type
  pseudogene
• IDs
  MGI:3650309
  NCBI Gene: 664920
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:3822955-3823775 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 2.73 cM

Strain
Comparison

• SNPs within 2kb
  118 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650309	pseudogene	Chr11:3822955-3824612 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010562	pseudogene	Chr11:772715-773534 (+)
A/J	MGP_AJ_G0010555	pseudogene	Chr11:804137-804951 (+)
AKR/J	MGP_AKRJ_G0010515	pseudogene	Chr11:831141-831953 (+)
BALB/cJ	MGP_BALBcJ_G0010529	pseudogene	Chr11:770373-771187 (+)
C3H/HeJ	MGP_C3HHeJ_G0010452	pseudogene	Chr11:756313-757136 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010797	pseudogene	Chr11:849934-853151 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009471	pseudogene	Chr11:702418-703220 (+)
CAST/EiJ	MGP_CASTEiJ_G0010277	pseudogene	Chr11:729581-730393 (+)
CBA/J	MGP_CBAJ_G0010424	pseudogene	Chr11:1056780-1057604 (+)
DBA/2J	MGP_DBA2J_G0010454	pseudogene	Chr11:712067-712890 (+)
FVB/NJ	MGP_FVBNJ_G0010472	pseudogene	Chr11:748699-749509 (+)
LP/J	MGP_LPJ_G0010544	pseudogene	Chr11:861725-862549 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010448	pseudogene	Chr11:765656-766468 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010776	pseudogene	Chr11:848893-849704 (+)
PWK/PhJ	MGP_PWKPhJ_G0010177	pseudogene	Chr11:704506-705396 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009991	pseudogene	Chr11:801460-802285 (+)
WSB/EiJ	MGP_WSBEiJ_G0010338	pseudogene	Chr11:720630-721446 (+)

Homology

• Gene Tree
  Gm11952
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000084077 (Evidence)
• NCBI Gene
  664920

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084077	Ensembl Gene Model | MGI Sequence Detail	821	C57BL/6J
transcript	ENSMUST00000121172	Ensembl | MGI Sequence Detail	821	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;