Gm11949 Pseudogene Detail

Summary

• Symbol
  Gm11949
• Name
  predicted gene 11949

• Feature Type
  pseudogene
• IDs
  MGI:3650314
  NCBI Gene: 382473
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:3575477-3575848 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 2.55 cM

Strain
Comparison

• SNPs within 2kb
  93 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650314	pseudogene	Chr11:3575235-3575906 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010558	pseudogene	Chr11:509378-509749 (-)
A/J	MGP_AJ_G0010551	pseudogene	Chr11:548528-548899 (-)
AKR/J	MGP_AKRJ_G0010511	pseudogene	Chr11:568750-569121 (-)
BALB/cJ	MGP_BALBcJ_G0010525	pseudogene	Chr11:515815-516186 (-)
C3H/HeJ	MGP_C3HHeJ_G0010448	pseudogene	Chr11:501797-502168 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010793	pseudogene	Chr11:585818-586189 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011688	pseudogene	Chr5:91285552-91285929 (-)
CAST/EiJ	MGP_CASTEiJ_G0010274	pseudogene	Chr11:467313-467683 (-)
CBA/J	MGP_CBAJ_G0010420	pseudogene	Chr11:758490-758861 (-)
DBA/2J	MGP_DBA2J_G0010450	pseudogene	Chr11:463371-463742 (-)
FVB/NJ	MGP_FVBNJ_G0010468	pseudogene	Chr11:493658-494029 (-)
LP/J	MGP_LPJ_G0010540	pseudogene	Chr11:602078-602449 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010444	pseudogene	Chr11:507099-507470 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010772	pseudogene	Chr11:584356-584727 (-)
PWK/PhJ	MGP_PWKPhJ_G0010174	pseudogene	Chr11:449965-451018 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009988	pseudogene	Chr11:540230-540606 (-)
WSB/EiJ	MGP_WSBEiJ_G0010335	pseudogene	Chr11:460003-460374 (-)

Homology

• Gene Tree
  Gm11949
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000084211 (Evidence)
• NCBI Gene
  382473

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084211	Ensembl Gene Model | MGI Sequence Detail	372	C57BL/6J
transcript	ENSMUST00000117640	Ensembl | MGI Sequence Detail	372	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;