Gm11951 Pseudogene Detail

Summary

• Symbol
  Gm11951
• Name
  predicted gene 11951

• Feature Type
  pseudogene
• IDs
  MGI:3650315
  NCBI Gene: 100504679
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:3583012-3583442 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 2.55 cM

Strain
Comparison

• SNPs within 2kb
  58 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650315	pseudogene	Chr11:3582974-3588396 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010560	pseudogene	Chr11:518521-518951 (-)
A/J	MGP_AJ_G0010553	pseudogene	Chr11:557184-557614 (-)
AKR/J	MGP_AKRJ_G0010513	pseudogene	Chr11:576198-576638 (-)
BALB/cJ	MGP_BALBcJ_G0010527	pseudogene	Chr11:524064-524494 (-)
C3H/HeJ	MGP_C3HHeJ_G0010450	pseudogene	Chr11:510450-510929 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010795	pseudogene	Chr11:593353-594823 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010161	pseudogene	Chr17:22152359-22152787 (+)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0010422	pseudogene	Chr11:766483-768492 (-)
DBA/2J	MGP_DBA2J_G0010452	pseudogene	Chr11:470906-471336 (-)
FVB/NJ	MGP_FVBNJ_G0010470	pseudogene	Chr11:502008-502438 (-)
LP/J	MGP_LPJ_G0010542	pseudogene	Chr11:609613-610043 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010446	pseudogene	Chr11:514876-515724 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010774	pseudogene	Chr11:592288-592718 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm11951
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00000079889 (Evidence)
• NCBI Gene
  100504679

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000079889	Ensembl Gene Model | MGI Sequence Detail	431	C57BL/6J
transcript	ENSMUST00000116005	Ensembl | MGI Sequence Detail	431	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11951:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106495	Chr11:3583461-3583506 (-)	-42 bp