Krtap9-21 Gene Detail

Summary

• Symbol
  Krtap9-21
• Name
  keratin associated protein 9-21
• Synonyms
  Gm11568

• Feature Type
  protein coding gene
• IDs
  MGI:3650331
  NCBI Gene: 432600
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:99748743-99749886 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 63.20 cM

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650331	protein coding gene	Chr11:99748743-99749887 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0019124	protein coding gene	Chr11:102571043-102572187 (+)
A/J	no annotation
AKR/J	MGP_AKRJ_G0019064	protein coding gene	Chr11:101296743-101299338 (+)
BALB/cJ	MGP_BALBcJ_G0019065	protein coding gene	Chr11:98776789-98777964 (+)
C3H/HeJ	MGP_C3HHeJ_G0018876	protein coding gene	Chr11:101477562-101478706 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0019515	protein coding gene	Chr11:105698468-105699612 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0017144	protein coding gene	Chr11:95732064-95733206 (+)
CAST/EiJ	MGP_CASTEiJ_G0018430	protein coding gene	Chr11:102461323-102462674 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0018946	protein coding gene	Chr11:97325923-97326944 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0018976	protein coding gene	Chr11:109781699-109782843 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0019554	protein coding gene	Chr11:101661799-101662839 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0017986	protein coding gene	Chr11:101371952-101372900 (+)
WSB/EiJ	no annotation

Homology

• Human Ortholog
  KRTAP9-1, keratin associated protein 9-1

• Vertebrate Orthologs
  9

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  KRTAP9-1, keratin associated protein 9-1
  
• Synonyms
  KAP9.1, KRTAP9L3
• Links
  HGNC:18912

  NCBI Gene ID: 728318

  neXtProt AC: NX_A8MXZ3

  UniProt: A8MXZ3

  
  
• Chr Location
  17q21.2; chr17:41189887-41190639 (+)  GRCh38

---

• Human Ortholog
  KRTAP9-2, keratin associated protein 9-2
  
• Synonyms
  KAP9.2, KRTAP9.2
• Links
  HGNC:16926

  NCBI Gene ID: 83899

  neXtProt AC: NX_Q9BYQ4

  UniProt: Q9BYQ4

  
  
• Chr Location
  17q21.2; chr17:41226648-41227652 (+)  GRCh38

---

• Human Ortholog
  KRTAP9-3, keratin associated protein 9-3
  
• Synonyms
  KAP9.3, KRTAP9.3
• Links
  HGNC:16927

  NCBI Gene ID: 83900

  neXtProt AC: NX_Q9BYQ3

  UniProt: Q9BYQ3

  
  
• Chr Location
  17q21.2; chr17:41232449-41233454 (+)  GRCh38

---

• Human Ortholog
  KRTAP9-4, keratin associated protein 9-4
  
• Synonyms
  KAP9.4, KRTAP9.4
• Links
  HGNC:18902

  NCBI Gene ID: 85280

  neXtProt AC: NX_Q9BYQ2

  UniProt: Q9BYQ2

  
  
• Chr Location
  17q21.2; chr17:41249687-41250653 (+)  GRCh38

---

• Human Ortholog
  KRTAP9-6, keratin associated protein 9-6
  
• Synonyms
  KAP9.6, KRTAP9.6, KRTAP9L2
• Links
  HGNC:18914

  NCBI Gene ID: 100507608

  neXtProt AC: NX_A8MVA2

  UniProt: A8MVA2

  
  
• Chr Location
  17

---

• Human Ortholog
  KRTAP9-7, keratin associated protein 9-7
  
• Synonyms
  KAP9.7, KRTAP9L1
• Links
  HGNC:18915

  NCBI Gene ID: 100505724

  neXtProt AC: NX_A8MTY7

  UniProt: A8MTY7

  
  
• Chr Location
  chr17:41275698-41276207 (+)  GRCh38

---

• Human Ortholog
  KRTAP9-8, keratin associated protein 9-8
  
• Synonyms
  KAP9.8, KRTAP9.8
• Links
  HGNC:17231

  NCBI Gene ID: 83901

  neXtProt AC: NX_Q9BYQ0

  UniProt: Q9BYQ0

  
  
• Chr Location
  17q21.2; chr17:41237999-41239004 (+)  GRCh38

---

• Human Ortholog
  KRTAP9-9, keratin associated protein 9-9
  
• Synonyms
  KAP9.5, KAP9.9, KRTAP9-5, KRTAP9.9
• Links
  HGNC:16773

  NCBI Gene ID: 81870

  neXtProt AC: NX_Q9BYP9

  UniProt: Q9BYP9

  
  
• Chr Location
  17q21.2; chr17:41255384-41256364 (+)  GRCh38

---

• MGI Vertebrate Homology
  Krtap9-21 stringent orthology
  8 human;1 mouse;1 rat
  
• HCOP
  vertebrate homology predictions: KRTAP9-1, KRTAP9-2, KRTAP9-3, KRTAP9-4, KRTAP9-6, KRTAP9-7, KRTAP9-8, KRTAP9-9
• Gene Tree
  Krtap9-21
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Genomic Mutations
  2 involving Krtap9-21
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  14 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  2
• GO References
  1

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  8
• UniProt
  1
• CCDS
  CCDS56803.1

• Ensembl
  ENSMUSG00000069717 (Evidence)
• NCBI Gene
  432600

Representative Sequences			Length	Strain/Species
genomic	432600	NCBI Gene Model | MGI Sequence Detail	1144	C57BL/6J
transcript	NM_001205030	RefSeq | MGI Sequence Detail	1144	C57BL/6
polypeptide	NP_001191959	RefSeq | MGI Sequence Detail	211	C57BL/6

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR002494 Keratin-associated protein

Molecular
Reagents

• All nucleic 3

  cDNA 3

Other
Accession IDs

MGI:7580916

References

• Summaries
  All 20

  Gene Ontology 1

  Phenotypes 7
• Earliest
  J:56548 Zheng B, et al., Engineering a mouse balancer chromosome. Nat Genet. 1999 Aug;22(4):375-8
• Latest
  J:357457 Kumar V, et al., Keratin-dependent thymic stromal lymphopoietin expression suggests a link between skin blistering and atopic disease. J Allergy Clin Immunol. 2016;138(5):1461-1464

TSS for Krtap9-21:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr104886	Chr11:99748741-99748744 (+)	0 bp