Gm11738 Gene Detail

Summary

• Symbol
  Gm11738
• Name
  predicted gene 11738

• Feature Type
  lncRNA gene
• IDs
  MGI:3650365
  NCBI Gene: 100503797
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:118005681-118009105 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 82.96 cM

Strain
Comparison

• SNPs within 2kb
  208 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650365	lncRNA gene	Chr11:118005681-118009105 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003110	antisense lncRNA gene	Chr11:122426687-122430111 (+)
A/J	MGP_AJ_G0003087	antisense lncRNA gene	Chr11:116995936-116999360 (+)
AKR/J	MGP_AKRJ_G0003068	antisense lncRNA gene	Chr11:120546135-120549559 (+)
BALB/cJ	MGP_BALBcJ_G0003074	antisense lncRNA gene	Chr11:117360279-117363703 (+)
C3H/HeJ	MGP_C3HHeJ_G0003030	antisense lncRNA gene	Chr11:120845879-120849303 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003217	antisense lncRNA gene	Chr11:126172325-126175749 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002751	antisense lncRNA gene	Chr11:114004756-114008404 (+)
CAST/EiJ	MGP_CASTEiJ_G0002999	antisense lncRNA gene	Chr11:122268014-122273271 (+)
CBA/J	MGP_CBAJ_G0003027	antisense lncRNA gene	Chr11:131111439-131114863 (+)
DBA/2J	MGP_DBA2J_G0003032	antisense lncRNA gene	Chr11:116386575-116389999 (+)
FVB/NJ	MGP_FVBNJ_G0003052	antisense lncRNA gene	Chr11:116023962-116027381 (+)
LP/J	MGP_LPJ_G0003107	antisense lncRNA gene	Chr11:122745989-122749413 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003041	antisense lncRNA gene	Chr11:130071367-130074786 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003221	antisense lncRNA gene	Chr11:121206013-121209437 (+)
PWK/PhJ	MGP_PWKPhJ_G0002957	antisense lncRNA gene	Chr11:117754619-117758048 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002901	antisense lncRNA gene	Chr11:120928483-120931898 (+)
WSB/EiJ	MGP_WSBEiJ_G0003030	antisense lncRNA gene	Chr11:121169726-121173150 (+)

Homology

• Gene Tree
  Gm11738
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000085511 (Evidence)
• NCBI Gene
  100503797

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085511	Ensembl Gene Model | MGI Sequence Detail	3425	C57BL/6J
transcript	ENSMUST00000134069	Ensembl | MGI Sequence Detail	2158	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;