Gm13497 Gene Detail

Summary

• Symbol
  Gm13497
• Name
  predicted gene 13497

• Feature Type
  lncRNA gene
• IDs
  MGI:3650384
  NCBI Gene: 329404
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:51131843-51185957 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 29.68 cM

Strain
Comparison

• SNPs within 2kb
  1579 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650384	lncRNA gene	Chr2:51131843-51185957 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005912	lincRNA gene	Chr2:50497953-50555899 (+)
A/J	MGP_AJ_G0005905	lincRNA gene	Chr2:48563603-48615613 (+)
AKR/J	MGP_AKRJ_G0005880	lincRNA gene	Chr2:49962308-50015203 (+)
BALB/cJ	MGP_BALBcJ_G0005884	lincRNA gene	Chr2:48668960-48723004 (+)
C3H/HeJ	MGP_C3HHeJ_G0005831	lincRNA gene	Chr2:49940074-49995125 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006044	lincRNA gene	Chr2:52006811-52064737 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005378	lincRNA gene	Chr2:46574581-46628133 (+)
CAST/EiJ	MGP_CASTEiJ_G0005767	lincRNA gene	Chr2:50033909-50091452 (+)
CBA/J	MGP_CBAJ_G0005816	lincRNA gene	Chr2:53934915-53993252 (+)
DBA/2J	MGP_DBA2J_G0005837	lincRNA gene	Chr2:48218695-48272130 (+)
FVB/NJ	MGP_FVBNJ_G0005863	lincRNA gene	Chr2:47911610-47964433 (+)
LP/J	MGP_LPJ_G0005916	lincRNA gene	Chr2:50417620-50476476 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005850	lincRNA gene	Chr2:55041720-55098829 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006041	lincRNA gene	Chr2:49858552-49916217 (+)
PWK/PhJ	MGP_PWKPhJ_G0005716	lincRNA gene	Chr2:48086853-48141782 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005628	lincRNA gene	Chr2:50038033-50093214 (+)
WSB/EiJ	MGP_WSBEiJ_G0005820	lincRNA gene	Chr2:50135179-50192386 (+)

Homology

• Gene Tree
  Gm13497
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13497
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000086349 (Evidence)
• NCBI Gene
  329404

Representative Sequences			Length	Strain/Species
genomic	329404	NCBI Gene Model | MGI Sequence Detail	54115	C57BL/6J
transcript	NR_040636	RefSeq | MGI Sequence Detail	2038	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;