Gata5os MGI Mouse Gene Detail - MGI:3650386 - GATA binding protein 5, opposite strand

Sequence Map

Chr2:179974650-179982525 bp, + strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650386	antisense lncRNA gene	Chr2:179974650-179982525 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003715	antisense lncRNA gene	Chr2:186848873-186856760 (+)
A/J	MGP_AJ_G0003696	antisense lncRNA gene	Chr2:179173326-179181200 (+)
AKR/J	MGP_AKRJ_G0003674	antisense lncRNA gene	Chr2:184546271-184554145 (+)
BALB/cJ	MGP_BALBcJ_G0003685	antisense lncRNA gene	Chr2:179637672-179645562 (+)
C3H/HeJ	MGP_C3HHeJ_G0003632	antisense lncRNA gene	Chr2:184885657-184893530 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003824	antisense lncRNA gene	Chr2:192241429-192249304 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003330	antisense lncRNA gene	Chr2:169863948-169871727 (+)
CAST/EiJ	MGP_CASTEiJ_G0003595	antisense lncRNA gene	Chr2:183135508-183143571 (+)
CBA/J	MGP_CBAJ_G0003629	antisense lncRNA gene	Chr2:199244956-199252842 (+)
DBA/2J	MGP_DBA2J_G0003636	antisense lncRNA gene	Chr2:178271659-178279534 (+)
FVB/NJ	MGP_FVBNJ_G0003658	antisense lncRNA gene	Chr2:176879362-176887259 (+)
LP/J	MGP_LPJ_G0003715	antisense lncRNA gene	Chr2:186854802-186862779 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003646	antisense lncRNA gene	Chr2:201851109-201858996 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003825	antisense lncRNA gene	Chr2:184501354-184509230 (+)
PWK/PhJ	MGP_PWKPhJ_G0003550	antisense lncRNA gene	Chr2:175781369-175789458 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003493	antisense lncRNA gene	Chr2:180995336-181003268 (+)
WSB/EiJ	MGP_WSBEiJ_G0003630	antisense lncRNA gene	Chr2:185482987-185490892 (+)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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			Length	Strain/Species	Flank
genomic	100036520	NCBI Gene Model \| MGI Sequence Detail	7876	C57BL/6J	± kb
transcript	NR_045877	RefSeq \| MGI Sequence Detail	1678	C57BL/6
polypeptide	Q8CEM4	UniProt \| EBI \| MGI Sequence Detail	167	Not Applicable

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Summaries

All 11
Earliest

J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
Latest

J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;

TSS for Gata5os:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr22220	Chr2:179974183-179974195 (+)	-461 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 12/10/2024 MGI 6.24