Gm13554 Gene Detail

Summary

• Symbol
  Gm13554
• Name
  predicted gene 13554

• Feature Type
  lncRNA gene
• IDs
  MGI:3650406
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:25949022-25950287 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 18.29 cM

Strain
Comparison

• SNPs within 2kb
  72 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650406	lncRNA gene	Chr2:25949022-25950287 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003524	antisense lncRNA gene	Chr2:24000792-24002057 (+)
A/J	MGP_AJ_G0003504	antisense lncRNA gene	Chr2:23072541-23073798 (+)
AKR/J	MGP_AKRJ_G0003483	antisense lncRNA gene	Chr2:23824074-23825331 (+)
BALB/cJ	MGP_BALBcJ_G0003493	antisense lncRNA gene	Chr2:23182548-23183866 (+)
C3H/HeJ	MGP_C3HHeJ_G0003441	antisense lncRNA gene	Chr2:23768464-23769755 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003631	antisense lncRNA gene	Chr2:24769193-24769589 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003141	antisense lncRNA gene	Chr2:21953595-21954833 (+)
CAST/EiJ	MGP_CASTEiJ_G0003404	antisense lncRNA gene	Chr2:23645478-23646708 (+)
CBA/J	MGP_CBAJ_G0003438	antisense lncRNA gene	Chr2:25608170-25612556 (+)
DBA/2J	MGP_DBA2J_G0003446	antisense lncRNA gene	Chr2:22897545-22898802 (+)
FVB/NJ	MGP_FVBNJ_G0003465	antisense lncRNA gene	Chr2:22649052-22650317 (+)
LP/J	MGP_LPJ_G0003519	antisense lncRNA gene	Chr2:23935708-23936939 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003453	antisense lncRNA gene	Chr2:25776050-25777315 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003634	antisense lncRNA gene	Chr2:23787311-23788572 (+)
PWK/PhJ	MGP_PWKPhJ_G0003360	antisense lncRNA gene	Chr2:22699804-22701051 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003305	antisense lncRNA gene	Chr2:23908587-23909842 (+)
WSB/EiJ	MGP_WSBEiJ_G0003439	antisense lncRNA gene	Chr2:23883766-23885016 (+)

Homology

• Gene Tree
  Gm13554
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000087515 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087515	Ensembl Gene Model | MGI Sequence Detail	1266	C57BL/6J
transcript	ENSMUST00000137349	Ensembl | MGI Sequence Detail	477	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:157972 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). Database Download. 2010;