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Gm12688 Gene Detail
Summary
  • Symbol
    Gm12688
  • Name
    predicted gene 12688
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3650434
    NCBI Gene: 102639232
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:99541834-99543888 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 45.71 cM
Strain
Comparison
more
  • SNPs within 2kb
    100 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3650434
 lncRNA gene Chr4:99541834-99543888 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006472
 lincRNA gene Chr4:99916348-99917724 (-)
A/J MGP_AJ_G0006464
 lincRNA gene Chr4:96426914-96428290 (-)
AKR/J MGP_AKRJ_G0006438
 lincRNA gene Chr4:98761848-98763224 (-)
BALB/cJ MGP_BALBcJ_G0006438
 lincRNA gene Chr4:96671497-96672873 (-)
C3H/HeJ MGP_C3HHeJ_G0006388
 lincRNA gene Chr4:99584033-99585409 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006604
 lincRNA gene Chr4:103697944-103699320 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005886
 lincRNA gene Chr4:91806649-91808008 (-)
CAST/EiJ MGP_CASTEiJ_G0006321
 lincRNA gene Chr4:97368920-97371660 (-)
CBA/J MGP_CBAJ_G0006371
 lincRNA gene Chr4:106894523-106895899 (-)
DBA/2J MGP_DBA2J_G0006393
 lincRNA gene Chr4:96145468-96146844 (-)
FVB/NJ MGP_FVBNJ_G0006415
 lincRNA gene Chr4:94996985-94998361 (-)
LP/J MGP_LPJ_G0006474
 lincRNA gene Chr4:100218637-100220013 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006402
 lincRNA gene Chr4:112596805-112598181 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006608
 lincRNA gene Chr4:99010288-99011664 (-)
PWK/PhJ MGP_PWKPhJ_G0006258
 lincRNA gene Chr4:94303555-94304978 (-)
SPRET/EiJ MGP_SPRETEiJ_G0006169
 lincRNA gene Chr4:96463868-96465251 (-)
WSB/EiJ MGP_WSBEiJ_G0006367
 lincRNA gene Chr4:99163008-99164404 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotype references
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    2
  • Gene trapped
    2
  • Radiation induced
    1
  • Targeted
    1
  • Genomic Mutations
    4 involving Gm12688
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    24
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000086096 Ensembl Gene Model | MGI Sequence Detail 2055 C57BL/6J ±  kb
transcript ENSMUST00000136525 Ensembl | MGI Sequence Detail 1167 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 15
    Phenotypes 7
  • Earliest
    J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
  • Latest
    J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory