Gm12687 Pseudogene Detail

Summary

• Symbol
  Gm12687
• Name
  predicted gene 12687

• Feature Type
  pseudogene
• IDs
  MGI:3650435
  NCBI Gene: 100417847
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:99504054-99504759 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 45.71 cM

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650435	pseudogene	Chr4:99503923-99504799 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012785	pseudogene	Chr4:99877200-99877905 (-)
A/J	MGP_AJ_G0012770	pseudogene	Chr4:96387456-96388161 (-)
AKR/J	MGP_AKRJ_G0012741	pseudogene	Chr4:98721145-98721850 (-)
BALB/cJ	MGP_BALBcJ_G0012751	pseudogene	Chr4:96634443-96635148 (-)
C3H/HeJ	MGP_C3HHeJ_G0012608	pseudogene	Chr4:99538158-99538863 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013083	pseudogene	Chr4:103652657-103653362 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011365	pseudogene	Chr4:91767615-91768341 (-)
CAST/EiJ	MGP_CASTEiJ_G0012363	pseudogene	Chr4:97327585-97328290 (-)
CBA/J	MGP_CBAJ_G0012584	pseudogene	Chr4:106845897-106846602 (-)
DBA/2J	MGP_DBA2J_G0012647	pseudogene	Chr4:96108770-96109475 (-)
FVB/NJ	MGP_FVBNJ_G0012651	pseudogene	Chr4:94957287-94957992 (-)
LP/J	MGP_LPJ_G0012722	pseudogene	Chr4:100180782-100181487 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012660	pseudogene	Chr4:112554818-112555523 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013090	pseudogene	Chr4:98971538-98972243 (-)
PWK/PhJ	MGP_PWKPhJ_G0012186	pseudogene	Chr4:94264257-94264962 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011995	pseudogene	Chr4:96421156-96421861 (-)
WSB/EiJ	MGP_WSBEiJ_G0012389	pseudogene	Chr4:99120917-99121622 (-)

Homology

• Gene Tree
  Gm12687
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12687
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000083698 (Evidence)
• NCBI Gene
  100417847

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083698	Ensembl Gene Model | MGI Sequence Detail	706	C57BL/6J
transcript	ENSMUST00000119752	Ensembl | MGI Sequence Detail	706	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;