Amd-ps4 Pseudogene Detail

Summary

• Symbol
  Amd-ps4
• Name
  S-adenosylmethionine decarboxylase, pseudogene 4
• Synonyms
  OTTMUSG00000006969

• Feature Type
  pseudogene
• IDs
  MGI:3650439
  NCBI Gene: 100040814
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:51253025-51254027 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 27.27 cM

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650439	pseudogene	Chr4:51252470-51254362 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014122	pseudogene	Chr9:22218819-22219821 (-)
A/J	MGP_AJ_G0014936	pseudogene	ChrX:152320578-152322241 (+)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0013503	pseudogene	Chr6:67851033-67852022 (+)
C3H/HeJ	MGP_C3HHeJ_G0014728	pseudogene	ChrX:153369881-153372683 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012943	pseudogene	Chr4:51581206-51582771 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0014797	pseudogene	ChrX:151329143-151330116 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0013472	pseudogene	Chr6:70309784-70310772 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0012946	pseudogene	Chr4:49426971-49427960 (-)
PWK/PhJ	MGP_PWKPhJ_G0012855	pseudogene	Chr6:66150219-66151323 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Amd-ps4
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14
• RefSeq
  1

• Ensembl
  ENSMUSG00000019836 (Evidence)
• NCBI Gene
  100040814

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000019836	Ensembl Gene Model | MGI Sequence Detail	1003	C57BL/6J
transcript	ENSMUST00000118392	Ensembl | MGI Sequence Detail	1003	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;