Gm12460 Pseudogene Detail

Summary

• Symbol
  Gm12460
• Name
  predicted gene 12460

• Feature Type
  pseudogene
• IDs
  MGI:3650440
  NCBI Gene: 666681
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:51190107-51190463 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 27.27 cM

Strain
Comparison

• SNPs within 2kb
  200 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650440	pseudogene	Chr4:51190086-51190463 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012650	pseudogene	Chr4:49732753-49733109 (+)
A/J	MGP_AJ_G0012637	pseudogene	Chr4:47867313-47867669 (+)
AKR/J	MGP_AKRJ_G0012607	pseudogene	Chr4:49119607-49119974 (+)
BALB/cJ	MGP_BALBcJ_G0012620	pseudogene	Chr4:47998650-47999006 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0011299	pseudogene	Chr13:81566232-81566588 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012239	pseudogene	Chr4:49303725-49304080 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0012519	pseudogene	Chr4:47758005-47758314 (+)
FVB/NJ	MGP_FVBNJ_G0012520	pseudogene	Chr4:47041692-47042048 (+)
LP/J	MGP_LPJ_G0012590	pseudogene	Chr4:49842076-49842432 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012527	pseudogene	Chr4:56438383-56438739 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012944	pseudogene	Chr4:49350064-49350420 (+)
PWK/PhJ	MGP_PWKPhJ_G0012065	pseudogene	Chr4:47797693-47798161 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011879	pseudogene	Chr4:48723933-48724292 (+)
WSB/EiJ	MGP_WSBEiJ_G0012260	pseudogene	Chr4:49256860-49257216 (+)

Homology

• Gene Tree
  Gm12460
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000084116 (Evidence)
• NCBI Gene
  666681

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084116	Ensembl Gene Model | MGI Sequence Detail	357	C57BL/6J
transcript	ENSMUST00000117147	Ensembl | MGI Sequence Detail	357	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;