Gm12690 Gene Detail

Summary

• Symbol
  Gm12690
• Name
  predicted gene 12690

• Feature Type
  lncRNA gene
• IDs
  MGI:3650444
  NCBI Gene: 638890
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:99457715-99461957 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 45.71 cM

Strain
Comparison

• SNPs within 2kb
  177 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650444	lncRNA gene	Chr4:99457715-99461957 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006471	lincRNA gene	Chr4:99829066-99832577 (+)
A/J	MGP_AJ_G0006463	lincRNA gene	Chr4:96340687-96344202 (+)
AKR/J	MGP_AKRJ_G0006437	lincRNA gene	Chr4:98673765-98677280 (+)
BALB/cJ	MGP_BALBcJ_G0006437	lincRNA gene	Chr4:96588335-96591850 (+)
C3H/HeJ	MGP_C3HHeJ_G0006387	lincRNA gene	Chr4:99490523-99494038 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006603	lincRNA gene	Chr4:103604765-103608276 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005885	lincRNA gene	Chr4:91717780-91722162 (+)
CAST/EiJ	MGP_CASTEiJ_G0006320	lincRNA gene	Chr4:97279217-97282757 (+)
CBA/J	MGP_CBAJ_G0006370	lincRNA gene	Chr4:106796198-106799713 (+)
DBA/2J	MGP_DBA2J_G0006392	lincRNA gene	Chr4:96062313-96065824 (+)
FVB/NJ	MGP_FVBNJ_G0006414	lincRNA gene	Chr4:94910792-94914307 (+)
LP/J	MGP_LPJ_G0006473	lincRNA gene	Chr4:100126594-100130105 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006401	lincRNA gene	Chr4:112493838-112497349 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006607	lincRNA gene	Chr4:98921810-98925325 (+)
PWK/PhJ	MGP_PWKPhJ_G0006257	lincRNA gene	Chr4:94215847-94219367 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006168	lincRNA gene	Chr4:96370363-96373259 (+)
WSB/EiJ	MGP_WSBEiJ_G0006366	lincRNA gene	Chr4:99072318-99075833 (+)

Homology

• Gene Tree
  Gm12690
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Gene trapped
  1
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12690
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000087332 (Evidence)
• NCBI Gene
  638890

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087332	Ensembl Gene Model | MGI Sequence Detail	4243	C57BL/6J
transcript	ENSMUST00000132108	Ensembl | MGI Sequence Detail	1085	Not Applicable

References

• Summaries
  All 12

  Phenotypes 7
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12

TSS for Gm12690:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37934	Chr4:99457755-99457771 (+)	48 bp