Gm13090 Gene Detail

Summary

• Symbol
  Gm13090
• Name
  predicted gene 13090

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:3650445
  NCBI Gene: 105704528
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:151174027-151175906 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 81.55 cM

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650445	protein coding gene	Chr4:151173438-151175919 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0029163	protein coding gene	Chr4:155120502-155122375 (+)
A/J	MGP_AJ_G0029128	protein coding gene	Chr4:148600926-148602805 (+)
AKR/J	MGP_AKRJ_G0029076	protein coding gene	Chr4:152668605-152670478 (+)
BALB/cJ	MGP_BALBcJ_G0029144	protein coding gene	Chr4:149095012-149096891 (+)
C3H/HeJ	MGP_C3HHeJ_G0028865	protein coding gene	Chr4:153237300-153239173 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0029593	protein coding gene	Chr4:160694782-160696661 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0026839	protein coding gene	Chr4:140982057-140983917 (+)
CAST/EiJ	MGP_CASTEiJ_G0028278	protein coding gene	Chr4:150522551-150524430 (+)
CBA/J	MGP_CBAJ_G0028827	protein coding gene	Chr4:165461974-165463847 (+)
DBA/2J	MGP_DBA2J_G0028976	protein coding gene	Chr4:148677102-148678975 (+)
FVB/NJ	MGP_FVBNJ_G0028940	protein coding gene	Chr4:147822101-147823974 (+)
LP/J	MGP_LPJ_G0029066	protein coding gene	Chr4:155052485-155054358 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0028967	protein coding gene	Chr4:168572592-168574465 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0029625	protein coding gene	Chr4:153196056-153197929 (+)
PWK/PhJ	MGP_PWKPhJ_G0027998	protein coding gene	Chr4:144713858-144715745 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0027832	protein coding gene	Chr4:147443595-147445474 (+)
WSB/EiJ	MGP_WSBEiJ_G0028358	protein coding gene	Chr4:153330488-153332361 (+)

Homology

• Gene Tree
  Gm13090
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  9
• Endonuclease-mediated
  1
• Targeted
  8
• Genomic Mutations
  3 involving Gm13090
• Find Mice (IMSR)
  11 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  4
• CCDS
  CCDS84827.1

• Ensembl
  ENSMUSG00000078491 (Evidence)
• NCBI Gene
  105704528

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078491	Ensembl Gene Model | MGI Sequence Detail	1880	C57BL/6J
transcript	ENSMUST00000105667	Ensembl | MGI Sequence Detail	746	Not Applicable
polypeptide	NP_001295375	RefSeq | MGI Sequence Detail	111	Not Specified

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 15

  Phenotypes 7
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:196071 van der Weyden L, et al., Cancer of mice and men: old twists and new tails. J Pathol. 2013 May;230(1):4-16